Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

__call__() (sknano.core.Cached method)
(sknano.core.NoInstances method)
(sknano.core.Singleton method)
(sknano.core.method_func method)
(sknano.core.with_doc method)
(sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)

A

A (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
a (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.geometric_regions.Cube attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
(sknano.core.geometric_regions.Square attribute)
a1 (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct2DLatticeMixin attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
a2 (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct2DLatticeMixin attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
a3 (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
a_star (sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
add_atom() (sknano.io.XYZ2DATAConverter method)
add_atomtype() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
add_atomtypes() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
add_default_arguments() (in module sknano.scripts)
add_type() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
(sknano.io.XYZ2DATAConverter method)
add_types() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
addCleanup() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
addTypeEqualityFunc() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
all() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
alpha (sknano.core.crystallography.Crystal3DLattice attribute)
alpha_star (sknano.core.crystallography.Reciprocal3DLattice attribute)
AlphaQuartz (class in sknano.core.crystallography)
AlphaQuartzGenerator (class in sknano.generators)
analyze_POAV() (sknano.utils.analysis.StructureAnalyzer method)
angle() (sknano.core.math.Vector method)
angles (sknano.core.atoms.Bonds attribute)
(sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
any() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
append() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
area (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.geometric_regions.Circle attribute)
(sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Geometric2DRegion attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
(sknano.core.geometric_regions.Rectangle attribute)
(sknano.core.geometric_regions.Square attribute)
(sknano.core.geometric_regions.Triangle attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
argmax() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
argmin() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
argpartition() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
argsort() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
aselect (sknano.core.atoms.Snapshot attribute)
(sknano.core.atoms.Trajectory attribute)
assert_() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertAlmostEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertAlmostEquals() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertCountEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertDictContainsSubset() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertDictEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertEquals() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertFalse() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertGreater() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertGreaterEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertIn() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertIs() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertIsInstance() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertIsNone() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertIsNot() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertIsNotNone() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertLess() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertLessEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertListEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertLogs() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertMultiLineEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotAlmostEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotAlmostEquals() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotEquals() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotIn() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotIsInstance() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertNotRegex() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertRaises() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertRaisesRegex() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertRaisesRegexp() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertRegex() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertRegexpMatches() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertSequenceEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertSetEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertTrue() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertTupleEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertWarns() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assertWarnsRegex() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
assign_unique_ids() (sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
assign_unique_types() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
astype() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
Atom (class in sknano.core.atoms)
atom1 (sknano.core.atoms.Bond attribute)
atom2 (sknano.core.atoms.Bond attribute)
atom_ids (sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
atom_selection (sknano.core.atoms.Snapshot attribute)
(sknano.core.atoms.Trajectory attribute)
atom_style (sknano.io.DATAFormatSpec attribute)
atom_tree (sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
atomic_masses (in module sknano.core.refdata)
atomic_numbers (in module sknano.core.refdata)
atomID (sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
Atoms (class in sknano.core.atoms)
atoms (sknano.core.atoms.Bond attribute)
(sknano.core.atoms.Bonds attribute)
(sknano.core.atoms.Snapshot attribute)
(sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
AtomsTestFixture (class in sknano.testing)
atomtype (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.TypeAtom attribute)
atomtypes (sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
axis (sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cylinder attribute)
axis_angle_from_rotation_matrix() (in module sknano.core.math)

B

b (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
b1 (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
b2 (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
b3 (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
b_star (sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
base (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
base_parser (in module sknano.scripts)
BaseClass (class in sknano.core)
basis (sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
BasisAtom (class in sknano.core.atoms)
BasisAtoms (class in sknano.core.atoms)
BCCStructure (class in sknano.core.crystallography)
BCCStructureGenerator (class in sknano.generators)
beta (sknano.core.crystallography.Crystal3DLattice attribute)
beta_star (sknano.core.crystallography.Reciprocal3DLattice attribute)
BilayerGraphene (class in sknano.structures)
BilayerGrapheneGenerator (class in sknano.generators)
Bond (class in sknano.core.atoms)
bond_angle_pairs (sknano.core.atoms.Bonds attribute)
Bonds (class in sknano.core.atoms)
bonds (sknano.core.atoms.KDTreeAtomMixin attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
bounds (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.molecules.Molecules attribute)
BulkGeneratorBase (class in sknano.generators)
bundle_density (sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.SWNTBundle attribute)
bundle_geometry (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
bundle_mass (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
bundle_packing (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
byteswap() (sknano.core.math.Point method)
(sknano.core.math.Vector method)

C

c (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.geometric_regions.Cuboid attribute)
C_C (in module sknano.core.refdata)
C_H (in module sknano.core.refdata)
c_star (sknano.core.crystallography.Reciprocal3DLattice attribute)
Cached (class in sknano.core)
CaesiumChlorideStructure (class in sknano.core.crystallography)
CaesiumChlorideStructureGenerator (class in sknano.generators)
cartesian_to_fractional() (sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
CCbond (in module sknano.core.refdata)
cell_area (sknano.core.crystallography.Crystal2DLattice attribute)
cell_matrix (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
cell_volume (sknano.core.crystallography.Crystal3DLattice attribute)
center (sknano.core.geometric_regions.Circle attribute)
(sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cube attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
(sknano.core.geometric_regions.Geometric2DRegion attribute)
(sknano.core.geometric_regions.Geometric3DRegion attribute)
(sknano.core.geometric_regions.GeometricRegion attribute)
(sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
(sknano.core.geometric_regions.Rectangle attribute)
(sknano.core.geometric_regions.Sphere attribute)
(sknano.core.geometric_regions.Square attribute)
(sknano.core.geometric_regions.Triangle attribute)
center_center_of_mass() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtoms method)
center_centroid() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.geometric_regions.Circle method)
(sknano.core.geometric_regions.Cone method)
(sknano.core.geometric_regions.Cube method)
(sknano.core.geometric_regions.Cuboid method)
(sknano.core.geometric_regions.Cylinder method)
(sknano.core.geometric_regions.Ellipse method)
(sknano.core.geometric_regions.Ellipsoid method)
(sknano.core.geometric_regions.Geometric2DRegion method)
(sknano.core.geometric_regions.Geometric3DRegion method)
(sknano.core.geometric_regions.GeometricRegion method)
(sknano.core.geometric_regions.Parallelepiped method)
(sknano.core.geometric_regions.Parallelogram method)
(sknano.core.geometric_regions.Rectangle method)
(sknano.core.geometric_regions.Sphere method)
(sknano.core.geometric_regions.Square method)
(sknano.core.geometric_regions.Triangle method)
center_CM() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.molecules.Molecules method)
center_com() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtoms method)
center_of_mass (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
centroid (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.Bond attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.geometric_regions.Circle attribute)
(sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cube attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
(sknano.core.geometric_regions.Geometric2DRegion attribute)
(sknano.core.geometric_regions.Geometric3DRegion attribute)
(sknano.core.geometric_regions.GeometricRegion attribute)
(sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
(sknano.core.geometric_regions.Rectangle attribute)
(sknano.core.geometric_regions.Sphere attribute)
(sknano.core.geometric_regions.Square attribute)
(sknano.core.geometric_regions.Triangle attribute)
Ch (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Ch_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
Ch_vec (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
ChargedAtom (class in sknano.core.atoms)
ChargedAtoms (class in sknano.core.atoms)
charges (sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
CHbond (in module sknano.core.refdata)
check_type() (in module sknano.core)
chiral_angle (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
chiral_set (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
chiral_type (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
chiral_types (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
choose() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
Circle (class in sknano.core.geometric_regions)
ClassSignature (class in sknano.core)
clear() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
clip() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
clip_bounds() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.molecules.Molecules method)
CM (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.molecules.Molecules attribute)
cmp_Ch() (in module sknano.structures)
CN (sknano.core.atoms.CNAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
CN_counts (sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
CNAtom (class in sknano.core.atoms)
CNAtoms (class in sknano.core.atoms)
column_matrix (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
com (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
comment_line (sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
compress() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
compute_bundle_density() (in module sknano.structures)
compute_centroid() (in module sknano.core.physics)
compute_Ch() (in module sknano.structures)
compute_chiral_angle() (in module sknano.structures)
compute_d() (in module sknano.structures)
compute_dR() (in module sknano.structures)
compute_dt() (in module sknano.structures)
compute_electronic_type() (in module sknano.structures)
compute_inertia_tensor() (in module sknano.core.physics)
compute_linear_mass_density() (in module sknano.structures)
compute_Lz() (in module sknano.structures)
compute_M() (in module sknano.structures)
compute_N() (in module sknano.structures)
compute_Natoms() (in module sknano.structures)
compute_Natoms_per_tube() (in module sknano.structures)
compute_Natoms_per_unit_cell() (in module sknano.structures)
compute_POAVs() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.POAVAtomsMixin method)
(sknano.core.atoms.StructureAtoms method)
compute_psi() (in module sknano.structures)
compute_R() (in module sknano.structures)
compute_R_chiral_angle() (in module sknano.structures)
compute_rdf() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
compute_rt() (in module sknano.structures)
compute_symmetry_operation() (in module sknano.structures)
compute_T() (in module sknano.structures)
compute_t1() (in module sknano.structures)
compute_t2() (in module sknano.structures)
compute_tau() (in module sknano.structures)
compute_tube_mass() (in module sknano.structures)
compute_unit_cell_mass() (in module sknano.structures)
Cone (class in sknano.core.geometric_regions)
conj() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
conjugate() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
consume() (in module sknano.core)
contains() (sknano.core.geometric_regions.Circle method)
(sknano.core.geometric_regions.Cone method)
(sknano.core.geometric_regions.Cube method)
(sknano.core.geometric_regions.Cuboid method)
(sknano.core.geometric_regions.Cylinder method)
(sknano.core.geometric_regions.Ellipse method)
(sknano.core.geometric_regions.Ellipsoid method)
(sknano.core.geometric_regions.Geometric2DRegion method)
(sknano.core.geometric_regions.Geometric3DRegion method)
(sknano.core.geometric_regions.GeometricRegion method)
(sknano.core.geometric_regions.Parallelepiped method)
(sknano.core.geometric_regions.Parallelogram method)
(sknano.core.geometric_regions.Rectangle method)
(sknano.core.geometric_regions.Sphere method)
(sknano.core.geometric_regions.Square method)
(sknano.core.geometric_regions.Triangle method)
ConventionalCellGraphene (class in sknano.structures)
ConventionalCellGrapheneGenerator (class in sknano.generators)
convert() (sknano.io.DATA2XYZConverter method)
(sknano.io.StructureConverter method)
(sknano.io.XYZ2DATAConverter method)
coordination_counts (sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
coordination_number_counts (sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
coordination_numbers (sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
coords (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.molecules.Molecules attribute)
Copper (class in sknano.core.crystallography)
CopperGenerator (class in sknano.generators)
copy() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Point method)
(sknano.core.math.Points method)
(sknano.core.math.Vector method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
cos_alpha (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
cos_alpha_star (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
cos_beta (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
cos_beta_star (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
cos_gamma (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct2DLatticeMixin attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
cos_gamma_star (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
count() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
countTestCases() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
cross() (sknano.core.math.Vector method)
Crystal2DLattice (class in sknano.core.crystallography)
Crystal2DStructure (class in sknano.core.crystallography)
Crystal3DLattice (class in sknano.core.crystallography)
Crystal3DStructure (class in sknano.core.crystallography)
crystal_cell (sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
CsClStructure (in module sknano.core.crystallography)
ctypes (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
Cube (class in sknano.core.geometric_regions)
cubic() (sknano.core.crystallography.Crystal3DLattice class method)
(sknano.core.crystallography.Reciprocal3DLattice class method)
CubicClosePackedStructure (class in sknano.core.crystallography)
Cuboid (class in sknano.core.geometric_regions)
cull() (sknano.core.atoms.Trajectory method)
cumprod() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
cumsum() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
cyclic_pairs() (in module sknano.core)
Cylinder (class in sknano.core.geometric_regions)

D

d (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
data (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
DATA2XYZConverter (class in sknano.io)
DATAData (class in sknano.io)
datafile (sknano.io.DATA2XYZConverter attribute)
(sknano.io.XYZ2DATAConverter attribute)
DATAFormatSpec (class in sknano.io)
DATAIOError
DATAReader (class in sknano.io)
DATAWriter (class in sknano.io)
debug() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
dedupe() (in module sknano.core)
defaultTestResult() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
delete() (sknano.io.DATAData method)
deprecated() (in module sknano.core)
diagonal() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
DiamondStructure (class in sknano.core.crystallography)
DiamondStructureGenerator (class in sknano.generators)
dipole_moments (sknano.core.atoms.DipoleAtoms attribute)
DipoleAtom (class in sknano.core.atoms)
DipoleAtoms (class in sknano.core.atoms)
Direct2DLatticeMixin (class in sknano.core.crystallography)
Direct3DLatticeMixin (class in sknano.core.crystallography)
distances (sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
doCleanups() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
dot() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
dotproduct() (in module sknano.core)
dr (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtom attribute)
(sknano.core.atoms.XYZAtoms attribute)
dR (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
dt (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
dt_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
dtype (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
dump() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
dumpobj() (in module sknano.core)
dumps() (sknano.core.math.Point method)
(sknano.core.math.Vector method)

E

electronic_type (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
element (sknano.core.atoms.Atom attribute)
(sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.CNAtom attribute)
(sknano.core.atoms.ChargedAtom attribute)
(sknano.core.atoms.DipoleAtom attribute)
(sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.TypeAtom attribute)
(sknano.core.atoms.VanDerWaalsAtom attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.XYZAtom attribute)
element1 (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
element2 (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
element_data (in module sknano.core.refdata)
element_names (in module sknano.core.refdata)
element_symbols (in module sknano.core.refdata)
elements (sknano.core.atoms.Atoms attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.DipoleAtoms attribute)
(sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.PBCAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
(sknano.core.atoms.VanDerWaalsAtoms attribute)
(sknano.core.atoms.VelocityAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
Ellipse (class in sknano.core.geometric_regions)
Ellipsoid (class in sknano.core.geometric_regions)
EnergyAtom (class in sknano.core.atoms)
EnergyAtoms (class in sknano.core.atoms)
etotal (sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.MDAtom attribute)
euclidean_distance() (sknano.core.math.Point method)
extend() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)

F

f (sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
fail() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failIf() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failIfAlmostEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failIfEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failUnless() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failUnlessAlmostEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failUnlessEqual() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
failUnlessRaises() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
FCCStructure (class in sknano.core.crystallography)
FCCStructureGenerator (class in sknano.generators)
fill() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
filter() (sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
filter_Ch() (in module sknano.structures)
filter_Ch_list() (in module sknano.structures)
filter_ids() (sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
filtered() (sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
filtered_ids() (sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
find_target_atom() (in module sknano.utils.analysis)
first_neighbors (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.NeighborAtomMixin attribute)
(sknano.core.atoms.NeighborAtomsMixin attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
first_true() (in module sknano.core)
fix_Lx (sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.UnrolledSWNTMixin attribute)
fix_Lz (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
flags (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
flat (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
flatten() (in module sknano.core)
(sknano.core.math.Point method)
(sknano.core.math.Vector method)
fmtstr (sknano.core.atoms.Atom attribute)
(sknano.core.BaseClass attribute)
(sknano.core.atoms.Atoms attribute)
(sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.Bond attribute)
(sknano.core.atoms.Bonds attribute)
(sknano.core.atoms.CNAtom attribute)
(sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.ChargedAtom attribute)
(sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.DipoleAtom attribute)
(sknano.core.atoms.DipoleAtoms attribute)
(sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.PBCAtoms attribute)
(sknano.core.atoms.Snapshot attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.Trajectory attribute)
(sknano.core.atoms.TypeAtom attribute)
(sknano.core.atoms.TypeAtoms attribute)
(sknano.core.atoms.VanDerWaalsAtom attribute)
(sknano.core.atoms.VanDerWaalsAtoms attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.VelocityAtoms attribute)
(sknano.core.atoms.XYZAtom attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.core.geometric_regions.Circle attribute)
(sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cube attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
(sknano.core.geometric_regions.Geometric2DRegion attribute)
(sknano.core.geometric_regions.Geometric3DRegion attribute)
(sknano.core.geometric_regions.GeometricRegion attribute)
(sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
(sknano.core.geometric_regions.Rectangle attribute)
(sknano.core.geometric_regions.Sphere attribute)
(sknano.core.geometric_regions.Square attribute)
(sknano.core.geometric_regions.Triangle attribute)
(sknano.core.molecules.Molecule attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
ForceAtom (class in sknano.core.atoms)
ForceAtoms (class in sknano.core.atoms)
forces (sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
format_spec() (sknano.io.DATAData class method)
fractional_matrix (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
fractional_to_cartesian() (sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
from_conventional_cell() (sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.GrapheneGenerator class method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.Graphene class method)
from_primitive_cell() (sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.GrapheneGenerator class method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.Graphene class method)
from_pymatgen_structure() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure class method)
(sknano.core.crystallography.Crystal3DStructure class method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
from_spacegroup() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure class method)
(sknano.core.crystallography.Crystal3DStructure class method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
frozendict (class in sknano.core)
Fullerene (class in sknano.structures)
FullereneGenerator (class in sknano.generators)
fx (sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
fy (sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
fz (sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)

G

gamma (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
gamma_star (sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
generate() (sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.BulkGeneratorBase method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GeneratorBase method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
generate_atoms() (in module sknano.testing)
generate_bundle() (sknano.generators.MWNTBundleGenerator method)
(sknano.generators.SWNTBundleGenerator method)
generate_bundle_coords() (sknano.generators.MWNTBundleGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanotubeBundleBase method)
(sknano.structures.NanotubeBundleMixin method)
(sknano.structures.SWNTBundle method)
generate_bundle_from_bundle_coords() (sknano.generators.MWNTBundleGenerator method)
(sknano.generators.SWNTBundleGenerator method)
generate_Ch_list() (in module sknano.structures)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.MWNTMixin method)
generate_Ch_property_grid() (in module sknano.structures)
generate_dt_mask() (sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.MWNTMixin method)
generate_fname() (sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator class method)
(sknano.generators.FullereneGenerator class method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator class method)
(sknano.generators.MWNTGenerator class method)
(sknano.generators.PrimitiveCellGrapheneGenerator class method)
(sknano.generators.SWNTBundleGenerator class method)
(sknano.generators.SWNTGenerator class method)
(sknano.generators.UnrolledSWNTGenerator class method)
generate_structure() (in module sknano.testing)
generate_unit_cell() (sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
GeneratorBase (class in sknano.generators)
GeneratorTestFixtures (class in sknano.testing)
Geometric2DRegion (class in sknano.core.geometric_regions)
Geometric3DRegion (class in sknano.core.geometric_regions)
GeometricRegion (class in sknano.core.geometric_regions)
GeometricTransformsMixin (class in sknano.core.geometric_regions)
get() (sknano.core.frozendict method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
get_atom() (sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
get_atoms() (sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.Snapshot method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
get_atomtypes() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
get_Ch_indices() (in module sknano.structures)
get_Ch_type() (in module sknano.structures)
get_coords() (sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.molecules.Molecules method)
get_fname() (in module sknano.core)
get_fpath() (in module sknano.core)
get_lattice_parameter() (sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.Iron method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.GoldGenerator method)
get_molecules() (sknano.core.molecules.Molecules method)
get_neighbors() (sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.NeighborAtomMixin method)
(sknano.core.atoms.NeighborAtomsMixin method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
get_object_signature() (in module sknano.core)
get_POAV_attr() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.POAVAtomsMixin method)
(sknano.core.atoms.StructureAtoms method)
get_snapshot() (sknano.core.atoms.Trajectory method)
get_types() (sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
get_wall() (sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.MWNTMixin method)
getatomattr() (sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
getdoc() (sknano.core.method_func method)
getfield() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
Gold (class in sknano.core.crystallography)
GoldGenerator (class in sknano.generators)
grams_per_amu (in module sknano.core.refdata)
grams_per_Da (in module sknano.core.refdata)
Graphene (class in sknano.structures)
GrapheneBase (class in sknano.structures)
GrapheneGenerator (class in sknano.generators)
GrapheneMixin (class in sknano.structures)
grouper() (in module sknano.core)

H

H (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
headers (sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
hexagonal() (sknano.core.crystallography.Crystal2DLattice class method)
(sknano.core.crystallography.Crystal3DLattice class method)
(sknano.core.crystallography.Reciprocal2DLattice class method)
(sknano.core.crystallography.Reciprocal3DLattice class method)
HexagonalClosePackedStructure (class in sknano.core.crystallography)
HexagonalGraphene (in module sknano.structures)

I

i (sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
id (sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
id() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
IDAtom (class in sknano.core.atoms)
IDAtoms (class in sknano.core.atoms)
ids (sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
imag (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
ImageAtom (class in sknano.core.atoms)
ImageAtoms (class in sknano.core.atoms)
images (sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
index() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
inertia_tensor (sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
insert() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
Iron (class in sknano.core.crystallography)
isdisjoint() (sknano.core.ListBasedSet method)
item() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
items() (sknano.core.frozendict method)
itemset() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
itemsize (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
iter_except() (in module sknano.core)
ix (sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
iy (sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
iz (sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)

K

KDTreeAtomMixin (class in sknano.core.atoms)
KDTreeAtomsMixin (class in sknano.core.atoms)
ke (sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.MDAtom attribute)
keys() (sknano.core.frozendict method)
kinetic_energies (sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
kNN (sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)

L

lattice (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
lattice_parameters (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
lattice_vectors (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
LatticeAtom (class in sknano.core.atoms)
LatticeAtoms (class in sknano.core.atoms)
length (sknano.core.atoms.Bond attribute)
(sknano.core.math.Vector attribute)
lengths (sknano.core.atoms.Bonds attribute)
(sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
lengths_and_angles (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
linear_mass_density (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
ListBasedSet (class in sknano.core)
listdir() (in module sknano.core)
listdir_dirnames() (in module sknano.core)
listdir_fnames() (in module sknano.core)
loadobj() (in module sknano.core)
longMessage (sknano.testing.AtomsTestFixture attribute)
(sknano.testing.GeneratorTestFixtures attribute)
Lx (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.UnrolledSWNTMixin attribute)
Ly (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.UnrolledSWNTMixin attribute)
Lz (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Lz_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)

M

m (sknano.core.atoms.Atom attribute)
M (sknano.core.atoms.Atoms attribute)
m (sknano.core.atoms.BasisAtom attribute)
M (sknano.core.atoms.BasisAtoms attribute)
m (sknano.core.atoms.ChargedAtom attribute)
M (sknano.core.atoms.ChargedAtoms attribute)
m (sknano.core.atoms.CNAtom attribute)
M (sknano.core.atoms.CNAtoms attribute)
m (sknano.core.atoms.DipoleAtom attribute)
M (sknano.core.atoms.DipoleAtoms attribute)
m (sknano.core.atoms.EnergyAtom attribute)
M (sknano.core.atoms.EnergyAtoms attribute)
m (sknano.core.atoms.ForceAtom attribute)
M (sknano.core.atoms.ForceAtoms attribute)
m (sknano.core.atoms.IDAtom attribute)
M (sknano.core.atoms.IDAtoms attribute)
m (sknano.core.atoms.ImageAtom attribute)
M (sknano.core.atoms.ImageAtoms attribute)
m (sknano.core.atoms.LatticeAtom attribute)
M (sknano.core.atoms.LatticeAtoms attribute)
m (sknano.core.atoms.MDAtom attribute)
M (sknano.core.atoms.MDAtoms attribute)
m (sknano.core.atoms.PBCAtom attribute)
M (sknano.core.atoms.PBCAtoms attribute)
m (sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.StructureAtom attribute)
M (sknano.core.atoms.StructureAtoms attribute)
m (sknano.core.atoms.TypeAtom attribute)
M (sknano.core.atoms.TypeAtoms attribute)
m (sknano.core.atoms.VanDerWaalsAtom attribute)
M (sknano.core.atoms.VanDerWaalsAtoms attribute)
m (sknano.core.atoms.VelocityAtom attribute)
M (sknano.core.atoms.VelocityAtoms attribute)
m (sknano.core.atoms.XYZAtom attribute)
M (sknano.core.atoms.XYZAtoms attribute)
(sknano.core.molecules.Molecules attribute)
(sknano.generators.SWNTBundleGenerator attribute)
m (sknano.generators.SWNTBundleGenerator attribute)
M (sknano.generators.SWNTGenerator attribute)
m (sknano.generators.SWNTGenerator attribute)
M (sknano.generators.UnrolledSWNTGenerator attribute)
m (sknano.generators.UnrolledSWNTGenerator attribute)
M (sknano.structures.SWNT attribute)
m (sknano.structures.SWNT attribute)
M (sknano.structures.SWNTBundle attribute)
m (sknano.structures.SWNTBundle attribute)
M (sknano.structures.SWNTMixin attribute)
m (sknano.structures.SWNTMixin attribute)
mag (sknano.core.math.Vector attribute)
magnitude (sknano.core.math.Vector attribute)
make_sig() (in module sknano.core)
make_supercell() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
map() (sknano.io.DATAData method)
map_Ch() (in module sknano.structures)
mapatomattr() (sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
mass (sknano.core.atoms.Atom attribute)
(sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.CNAtom attribute)
(sknano.core.atoms.ChargedAtom attribute)
(sknano.core.atoms.DipoleAtom attribute)
(sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.TypeAtom attribute)
(sknano.core.atoms.VanDerWaalsAtom attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.XYZAtom attribute)
masses (sknano.core.atoms.Atoms attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.DipoleAtoms attribute)
(sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.PBCAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
(sknano.core.atoms.VanDerWaalsAtoms attribute)
(sknano.core.atoms.VelocityAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.molecules.Molecules attribute)
matrix (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
max() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
max_wall_diameter (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
max_walls (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
maxbox() (sknano.io.DATAData method)
maxDiff (sknano.testing.AtomsTestFixture attribute)
(sknano.testing.GeneratorTestFixtures attribute)
maxtype() (sknano.io.DATAData method)
MDAtom (class in sknano.core.atoms)
MDAtoms (class in sknano.core.atoms)
mean() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
mean_angle (sknano.core.atoms.Bonds attribute)
mean_length (sknano.core.atoms.Bonds attribute)
measure (sknano.core.geometric_regions.Circle attribute)
(sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cube attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
(sknano.core.geometric_regions.Geometric2DRegion attribute)
(sknano.core.geometric_regions.Geometric3DRegion attribute)
(sknano.core.geometric_regions.GeometricRegion attribute)
(sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
(sknano.core.geometric_regions.Rectangle attribute)
(sknano.core.geometric_regions.Sphere attribute)
(sknano.core.geometric_regions.Square attribute)
(sknano.core.geometric_regions.Triangle attribute)
memoize() (in module sknano.core)
method_func (class in sknano.core)
metric_tensor (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
min() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
min_wall_diameter (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
misalignment_angles (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
mol (sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
mol_ids (sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
Molecule (class in sknano.core.molecules)
molecule_ids (sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
moleculeID (sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
Molecules (class in sknano.core.molecules)
mols (sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
monoclinic() (sknano.core.crystallography.Crystal3DLattice class method)
(sknano.core.crystallography.Reciprocal3DLattice class method)
MoS2 (class in sknano.core.crystallography)
MoS2Generator (class in sknano.generators)
mro() (sknano.core.Cached method)
(sknano.core.NoInstances method)
(sknano.core.Singleton method)
MWNT (class in sknano.structures)
MWNTBundle (class in sknano.structures)
MWNTBundleGenerator (class in sknano.generators)
MWNTGenerator (class in sknano.generators)
MWNTMixin (class in sknano.structures)

N

n (sknano.core.atoms.POAV1 attribute)
N (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
n (sknano.generators.SWNTBundleGenerator attribute)
N (sknano.generators.SWNTGenerator attribute)
n (sknano.generators.SWNTGenerator attribute)
N (sknano.generators.UnrolledSWNTGenerator attribute)
n (sknano.generators.UnrolledSWNTGenerator attribute)
N (sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
n (sknano.structures.SWNT attribute)
N (sknano.structures.SWNTBundle attribute)
n (sknano.structures.SWNTBundle attribute)
N (sknano.structures.SWNTMixin attribute)
n (sknano.structures.SWNTMixin attribute)
n1 (sknano.core.atoms.POAV2 attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
n2 (sknano.core.atoms.POAV2 attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
n3 (sknano.core.atoms.POAV2 attribute)
NaClStructure (in module sknano.core.crystallography)
nanogen() (in module sknano.scripts)
(in module sknano.scripts.nanogen)
nanogen_parser() (in module sknano.scripts)
NanoStructureBase (class in sknano.structures)
NanotubeBundleBase (class in sknano.structures)
NanotubeBundleMixin (class in sknano.structures)
Natoms (sknano.core.atoms.Atoms attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.DipoleAtoms attribute)
(sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.PBCAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
(sknano.core.atoms.VanDerWaalsAtoms attribute)
(sknano.core.atoms.VelocityAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Natoms_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
Natoms_per_bundle (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
Natoms_per_layer (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
Natoms_per_tube (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Natoms_per_unit_cell (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Natoms_per_wall (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
Nbonds (sknano.core.atoms.Bonds attribute)
nbytes (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
ncycles() (in module sknano.core)
ndim (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
nearest_neighbors (sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
neighbor_counts() (sknano.core.atoms.KDTreeAtomsMixin method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
neighbor_distances (sknano.core.atoms.KDTreeAtomMixin attribute)
(sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
NeighborAtomMixin (class in sknano.core.atoms)
NeighborAtomsMixin (class in sknano.core.atoms)
neighbors (sknano.core.atoms.KDTreeAtomMixin attribute)
(sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
newbyteorder() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
newxyz() (sknano.io.DATAData method)
nlayers (sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.UnrolledSWNTMixin attribute)
Nmolecules (sknano.core.molecules.Molecules attribute)
NN (sknano.core.atoms.KDTreeAtomMixin attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
NNrc (sknano.core.atoms.KDTreeAtomsMixin attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
NoInstances (class in sknano.core)
nonzero() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
norm (sknano.core.math.Vector attribute)
normalize() (sknano.core.math.Vector method)
norms (sknano.core.math.Vectors attribute)
nselect (sknano.core.atoms.Snapshot attribute)
(sknano.core.atoms.Trajectory attribute)
nselected (sknano.core.atoms.Snapshot attribute)
(sknano.core.atoms.Trajectory attribute)
Nsnaps (sknano.core.atoms.Trajectory attribute)
nth() (in module sknano.core)
Ntubes (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Ntypes (sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
Nwalls (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
nx (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.UnrolledSWNTMixin attribute)
ny (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanotubeBundleBase attribute)
(sknano.structures.NanotubeBundleMixin attribute)
(sknano.structures.SWNTBundle attribute)
nz (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
nz_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)

O

o (sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
oblique() (sknano.core.crystallography.Crystal2DLattice class method)
(sknano.core.crystallography.Reciprocal2DLattice class method)
optional_debug() (in module sknano.core)
ordinal_form() (in module sknano.core)
ortho_matrix (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
orthorhombic() (sknano.core.crystallography.Crystal3DLattice class method)
(sknano.core.crystallography.Reciprocal3DLattice class method)

P

p (sknano.core.atoms.DipoleAtom attribute)
P (sknano.core.atoms.DipoleAtoms attribute)
p (sknano.core.math.Vector attribute)
p0 (sknano.core.math.Vector attribute)
p1 (sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Triangle attribute)
p2 (sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Triangle attribute)
p3 (sknano.core.geometric_regions.Triangle attribute)
padnone() (in module sknano.core)
pairwise() (in module sknano.core)
Parallelepiped (class in sknano.core.geometric_regions)
Parallelogram (class in sknano.core.geometric_regions)
partition() (in module sknano.core)
(sknano.core.math.Point method)
(sknano.core.math.Vector method)
pbc (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.PBCAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
PBCAtom (class in sknano.core.atoms)
PBCAtoms (class in sknano.core.atoms)
pe (sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.MDAtom attribute)
pluralize() (in module sknano.core)
pmax (sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
pmin (sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
POAV (class in sknano.core.atoms)
POAV1 (class in sknano.core.atoms)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.POAVAtomMixin attribute)
(sknano.core.atoms.POAVAtomsMixin attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
POAV2 (class in sknano.core.atoms)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.POAVAtomMixin attribute)
(sknano.core.atoms.POAVAtomsMixin attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
POAVAtomMixin (class in sknano.core.atoms)
POAVAtomsMixin (class in sknano.core.atoms)
POAVR (class in sknano.core.atoms)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.POAVAtomMixin attribute)
(sknano.core.atoms.POAVAtomsMixin attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
Point (class in sknano.core.math)
PointGroup (class in sknano.utils.symmetry_groups)
Points (class in sknano.core.math)
pop() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
potential_energies (sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
powerset() (in module sknano.core)
PrimitiveCellGraphene (class in sknano.structures)
PrimitiveCellGrapheneGenerator (class in sknano.generators)
prod() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
projection() (sknano.core.math.Vector method)
ptp() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
put() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
px (sknano.core.atoms.DipoleAtom attribute)
py (sknano.core.atoms.DipoleAtom attribute)
pymatgen_structure() (in module sknano.core.crystallography)
pyramidalization_angles (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
pz (sknano.core.atoms.DipoleAtom attribute)

Q

q (sknano.core.atoms.ChargedAtom attribute)
(sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
quantify() (in module sknano.core)
query_atom_tree() (sknano.core.atoms.KDTreeAtomsMixin method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
query_ball_point() (sknano.core.atoms.KDTreeAtomsMixin method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)

R

r (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtom attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.geometric_regions.Circle attribute)
(sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Sphere attribute)
R (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
r0 (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.XYZAtom attribute)
R1 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
r1 (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
R2 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
r2 (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.GrapheneMixin attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
R3 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
r_vdw (sknano.core.atoms.VanDerWaalsAtom attribute)
(sknano.core.atoms.VanDerWaalsAtoms attribute)
random_combination() (in module sknano.core)
random_combination_with_replacement() (in module sknano.core)
random_permutation() (in module sknano.core)
random_product() (in module sknano.core)
ravel() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
read() (sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureReader class method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
read_data() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
read_dump() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
read_xyz() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
real (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
Reciprocal2DLattice (class in sknano.core.crystallography)
Reciprocal2DLatticeMixin (class in sknano.core.crystallography)
Reciprocal3DLattice (class in sknano.core.crystallography)
Reciprocal3DLatticeMixin (class in sknano.core.crystallography)
reciprocal_lattice (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
reciprocal_v1 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
reciprocal_v2 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
reciprocal_v3 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
Rectangle (class in sknano.core.geometric_regions)
rectangular() (sknano.core.crystallography.Crystal2DLattice class method)
(sknano.core.crystallography.Reciprocal2DLattice class method)
RectangularGraphene (in module sknano.structures)
reference_snapshot (sknano.core.atoms.Trajectory attribute)
reflection_matrix() (in module sknano.core.math)
rejection() (sknano.core.math.Vector method)
remove() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
reorder() (sknano.io.DATAData method)
repeat() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
repeatfunc() (in module sknano.core)
replace() (sknano.io.DATAData method)
reset() (sknano.testing.Timer method)
reshape() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
resize() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
reverse() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Points method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
rezero() (sknano.core.atoms.Atom method)
(sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtom method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtom method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtom method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtom method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtom method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtom method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtom method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtom method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtom method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtom method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtom method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtom method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Point method)
(sknano.core.math.Points method)
(sknano.core.math.Vector method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
rezero_array() (in module sknano.core)
rezero_components() (sknano.core.math.Vector method)
rezero_coords() (sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Point method)
(sknano.core.molecules.Molecules method)
rezero_xyz() (sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.molecules.Molecules method)
RocksaltStructure (class in sknano.core.crystallography)
RocksaltStructureGenerator (class in sknano.generators)
rotate() (in module sknano.core.math)
(sknano.core.atoms.Atom method)
(sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bond method)
(sknano.core.atoms.CNAtom method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtom method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtom method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtom method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtom method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtom method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtom method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtom method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtom method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtom method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtom method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtom method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.core.geometric_regions.Circle method)
(sknano.core.geometric_regions.Cone method)
(sknano.core.geometric_regions.Cube method)
(sknano.core.geometric_regions.Cuboid method)
(sknano.core.geometric_regions.Cylinder method)
(sknano.core.geometric_regions.Ellipse method)
(sknano.core.geometric_regions.Ellipsoid method)
(sknano.core.geometric_regions.Geometric2DRegion method)
(sknano.core.geometric_regions.Geometric3DRegion method)
(sknano.core.geometric_regions.GeometricTransformsMixin method)
(sknano.core.geometric_regions.Parallelepiped method)
(sknano.core.geometric_regions.Parallelogram method)
(sknano.core.geometric_regions.Rectangle method)
(sknano.core.geometric_regions.Sphere method)
(sknano.core.geometric_regions.Square method)
(sknano.core.geometric_regions.Triangle method)
(sknano.core.math.Point method)
(sknano.core.math.Points method)
(sknano.core.math.Vector method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
rotation_matrix() (in module sknano.core.math)
round() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
roundrobin() (in module sknano.core)
row_matrix (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
rs (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
rt (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
rt_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
run() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
running (sknano.testing.Timer attribute)
rx (sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
Rx() (in module sknano.core.math)
ry (sknano.core.geometric_regions.Ellipse attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
Ry() (in module sknano.core.math)
rz (sknano.core.geometric_regions.Ellipsoid attribute)
Rz() (in module sknano.core.math)

S

save() (sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.BulkGeneratorBase method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GeneratorBase method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
scale() (sknano.core.math.Vector method)
scaling_matrix (sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
scaling_matrix() (in module sknano.core.math)
searchsorted() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
second_neighbors (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.NeighborAtomMixin attribute)
(sknano.core.atoms.NeighborAtomsMixin attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
sections (sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
selected (sknano.core.atoms.Snapshot attribute)
set_neighbors() (sknano.core.atoms.MDAtom method)
(sknano.core.atoms.NeighborAtomMixin method)
(sknano.core.atoms.StructureAtom method)
set_pbc() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
setfield() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
setflags() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
setUp() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
setUpClass() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
shape (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
shortDescription() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
sigma_pi_angles (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
sin_alpha (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
sin_alpha_star (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
sin_beta (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
sin_beta_star (sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
sin_gamma (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Direct2DLatticeMixin attribute)
(sknano.core.crystallography.Direct3DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
sin_gamma_star (sknano.core.crystallography.Crystal2DLattice attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLattice attribute)
(sknano.core.crystallography.Reciprocal2DLatticeMixin attribute)
(sknano.core.crystallography.Reciprocal3DLattice attribute)
(sknano.core.crystallography.Reciprocal3DLatticeMixin attribute)
Singleton (class in sknano.core)
size (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
skipTest() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
sknano() (in module sknano.scripts)
sknano.apps (module)
sknano.apps.nanogen_gui (module)
sknano.core (module)
sknano.core.atoms (module)
sknano.core.crystallography (module)
sknano.core.geometric_regions (module)
sknano.core.math (module)
sknano.core.molecules (module)
sknano.core.physics (module)
sknano.core.refdata (module)
sknano.data (module)
sknano.generators (module)
sknano.io (module)
sknano.scripts (module)
sknano.scripts.nanogen (module)
sknano.scripts.nanogenui (module)
sknano.structures (module)
sknano.testing (module)
sknano.utils (module)
sknano.utils.analysis (module)
sknano.utils.symmetry_groups (module)
sknano_parser() (in module sknano.scripts)
Snapshot (class in sknano.core.atoms)
snapshots (sknano.core.atoms.Trajectory attribute)
sort() (sknano.core.atoms.Atoms method)
(sknano.core.UserList method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.math.Point method)
(sknano.core.math.Points method)
(sknano.core.math.Vector method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
SpaceGroup (class in sknano.utils.symmetry_groups)
SphaleriteStructure (in module sknano.core.crystallography)
Sphere (class in sknano.core.geometric_regions)
Square (class in sknano.core.geometric_regions)
square() (sknano.core.crystallography.Crystal2DLattice class method)
(sknano.core.crystallography.Reciprocal2DLattice class method)
squeeze() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
start() (sknano.testing.Timer method)
std() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
stop() (sknano.testing.Timer method)
strides (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
structure (sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
structure_data (sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
STRUCTURE_GENERATORS (in module sknano.generators)
StructureAnalyzer (class in sknano.utils.analysis)
StructureAtom (class in sknano.core.atoms)
StructureAtoms (class in sknano.core.atoms)
StructureConverter (class in sknano.io)
StructureFormatSpec (class in sknano.io)
StructureIO (class in sknano.io)
StructureIOError
StructureReader (class in sknano.io)
StructureWriter (class in sknano.io)
subTest() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
sum() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
supercell_lattice_points() (in module sknano.core.crystallography)
swapaxes() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
SWNT (class in sknano.structures)
SWNTBundle (class in sknano.structures)
SWNTBundleGenerator (class in sknano.generators)
SWNTGenerator (class in sknano.generators)
SWNTMixin (class in sknano.structures)
symbol (sknano.core.atoms.Atom attribute)
(sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.CNAtom attribute)
(sknano.core.atoms.ChargedAtom attribute)
(sknano.core.atoms.DipoleAtom attribute)
(sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.TypeAtom attribute)
(sknano.core.atoms.VanDerWaalsAtom attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.XYZAtom attribute)
symbols (sknano.core.atoms.Atoms attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.CNAtoms attribute)
(sknano.core.atoms.ChargedAtoms attribute)
(sknano.core.atoms.DipoleAtoms attribute)
(sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.ForceAtoms attribute)
(sknano.core.atoms.IDAtoms attribute)
(sknano.core.atoms.ImageAtoms attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.PBCAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
(sknano.core.atoms.VanDerWaalsAtoms attribute)
(sknano.core.atoms.VelocityAtoms attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.molecules.Molecules attribute)

T

T (sknano.core.atoms.POAV attribute)
t (sknano.core.atoms.POAV attribute)
T (sknano.core.atoms.POAV1 attribute)
t (sknano.core.atoms.POAV1 attribute)
T (sknano.core.atoms.POAV2 attribute)
t (sknano.core.atoms.POAV2 attribute)
T (sknano.core.atoms.POAVR attribute)
t (sknano.core.atoms.POAVR attribute)
T (sknano.core.math.Point attribute)
(sknano.core.math.Vector attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
t0_snapshot (sknano.core.atoms.Trajectory attribute)
t1 (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
t2 (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
T_list (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
tabulate() (in module sknano.core)
take() (in module sknano.core)
(sknano.core.math.Point method)
(sknano.core.math.Vector method)
tearDown() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
tearDownClass() (sknano.testing.AtomsTestFixture method)
(sknano.testing.GeneratorTestFixtures method)
tetragonal() (sknano.core.crystallography.Crystal3DLattice class method)
(sknano.core.crystallography.Reciprocal3DLattice class method)
third_neighbors (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.NeighborAtomMixin attribute)
(sknano.core.atoms.NeighborAtomsMixin attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
time_selection (sknano.core.atoms.Trajectory attribute)
Timer (class in sknano.testing)
timestep_index() (sknano.core.atoms.Trajectory method)
timesteps (sknano.core.atoms.Trajectory attribute)
timethis() (in module sknano.core)
tobytes() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
todict() (sknano.core.atoms.Atom method)
(sknano.core.BaseClass method)
(sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.Bond method)
(sknano.core.atoms.Bonds method)
(sknano.core.atoms.CNAtom method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtom method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtom method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtom method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtom method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtom method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtom method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.KDTreeAtomMixin method)
(sknano.core.atoms.LatticeAtom method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtom method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.POAV method)
(sknano.core.atoms.POAV1 method)
(sknano.core.atoms.POAV2 method)
(sknano.core.atoms.POAVR method)
(sknano.core.atoms.Snapshot method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.Trajectory method)
(sknano.core.atoms.TypeAtom method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtom method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtom method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.core.geometric_regions.Circle method)
(sknano.core.geometric_regions.Cone method)
(sknano.core.geometric_regions.Cube method)
(sknano.core.geometric_regions.Cuboid method)
(sknano.core.geometric_regions.Cylinder method)
(sknano.core.geometric_regions.Ellipse method)
(sknano.core.geometric_regions.Ellipsoid method)
(sknano.core.geometric_regions.Geometric2DRegion method)
(sknano.core.geometric_regions.Geometric3DRegion method)
(sknano.core.geometric_regions.GeometricRegion method)
(sknano.core.geometric_regions.Parallelepiped method)
(sknano.core.geometric_regions.Parallelogram method)
(sknano.core.geometric_regions.Rectangle method)
(sknano.core.geometric_regions.Sphere method)
(sknano.core.geometric_regions.Square method)
(sknano.core.geometric_regions.Triangle method)
(sknano.core.molecules.Molecule method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.NanotubeBundleBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
tofile() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
tolist() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
tostring() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
total_energies (sknano.core.atoms.EnergyAtoms attribute)
(sknano.core.atoms.MDAtoms attribute)
totient_func() (in module sknano.core.math)
trace() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
Trajectory (class in sknano.core.atoms)
transform_lattice() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
transformation_matrix() (in module sknano.core.math)
translate() (sknano.core.atoms.Atom method)
(sknano.core.atoms.Atoms method)
(sknano.core.atoms.BasisAtom method)
(sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.CNAtom method)
(sknano.core.atoms.CNAtoms method)
(sknano.core.atoms.ChargedAtom method)
(sknano.core.atoms.ChargedAtoms method)
(sknano.core.atoms.DipoleAtom method)
(sknano.core.atoms.DipoleAtoms method)
(sknano.core.atoms.EnergyAtom method)
(sknano.core.atoms.EnergyAtoms method)
(sknano.core.atoms.ForceAtom method)
(sknano.core.atoms.ForceAtoms method)
(sknano.core.atoms.IDAtom method)
(sknano.core.atoms.IDAtoms method)
(sknano.core.atoms.ImageAtom method)
(sknano.core.atoms.ImageAtoms method)
(sknano.core.atoms.LatticeAtom method)
(sknano.core.atoms.LatticeAtoms method)
(sknano.core.atoms.MDAtom method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtom method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtom method)
(sknano.core.atoms.StructureAtoms method)
(sknano.core.atoms.TypeAtom method)
(sknano.core.atoms.TypeAtoms method)
(sknano.core.atoms.VanDerWaalsAtom method)
(sknano.core.atoms.VanDerWaalsAtoms method)
(sknano.core.atoms.VelocityAtom method)
(sknano.core.atoms.VelocityAtoms method)
(sknano.core.atoms.XYZAtom method)
(sknano.core.atoms.XYZAtoms method)
(sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.core.geometric_regions.Circle method)
(sknano.core.geometric_regions.Cone method)
(sknano.core.geometric_regions.Cube method)
(sknano.core.geometric_regions.Cuboid method)
(sknano.core.geometric_regions.Cylinder method)
(sknano.core.geometric_regions.Ellipse method)
(sknano.core.geometric_regions.Ellipsoid method)
(sknano.core.geometric_regions.Geometric2DRegion method)
(sknano.core.geometric_regions.Geometric3DRegion method)
(sknano.core.geometric_regions.GeometricTransformsMixin method)
(sknano.core.geometric_regions.Parallelepiped method)
(sknano.core.geometric_regions.Parallelogram method)
(sknano.core.geometric_regions.Rectangle method)
(sknano.core.geometric_regions.Sphere method)
(sknano.core.geometric_regions.Square method)
(sknano.core.geometric_regions.Triangle method)
(sknano.core.math.Point method)
(sknano.core.math.Points method)
(sknano.core.math.Vector method)
(sknano.core.math.Vectors method)
(sknano.core.molecules.Molecules method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
transpose() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
Triangle (class in sknano.core.geometric_regions)
triclinic() (sknano.core.crystallography.Crystal3DLattice class method)
(sknano.core.crystallography.Reciprocal3DLattice class method)
tselect (sknano.core.atoms.Snapshot attribute)
(sknano.core.atoms.Trajectory attribute)
tube_length (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
tube_mass (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
Tvec (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
type (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.TypeAtom attribute)
typeassert() (in module sknano.core)
TypeAtom (class in sknano.core.atoms)
TypeAtoms (class in sknano.core.atoms)
typed_property() (in module sknano.core)
typemap (sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)
types (sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.TypeAtoms attribute)

U

u (sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
unique_elements() (in module sknano.core)
unit_cell (sknano.core.crystallography.AlphaQuartz attribute)
(sknano.core.crystallography.BCCStructure attribute)
(sknano.core.crystallography.CaesiumChlorideStructure attribute)
(sknano.core.crystallography.Copper attribute)
(sknano.core.crystallography.Crystal2DStructure attribute)
(sknano.core.crystallography.Crystal3DStructure attribute)
(sknano.core.crystallography.CsClStructure attribute)
(sknano.core.crystallography.CubicClosePackedStructure attribute)
(sknano.core.crystallography.DiamondStructure attribute)
(sknano.core.crystallography.FCCStructure attribute)
(sknano.core.crystallography.Gold attribute)
(sknano.core.crystallography.HexagonalClosePackedStructure attribute)
(sknano.core.crystallography.Iron attribute)
(sknano.core.crystallography.MoS2 attribute)
(sknano.core.crystallography.NaClStructure attribute)
(sknano.core.crystallography.RocksaltStructure attribute)
(sknano.core.crystallography.SphaleriteStructure attribute)
(sknano.core.crystallography.ZincblendeStructure attribute)
(sknano.generators.AlphaQuartzGenerator attribute)
(sknano.generators.BCCStructureGenerator attribute)
(sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.CaesiumChlorideStructureGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.CopperGenerator attribute)
(sknano.generators.DiamondStructureGenerator attribute)
(sknano.generators.FCCStructureGenerator attribute)
(sknano.generators.FullereneGenerator attribute)
(sknano.generators.GoldGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.MoS2Generator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.RocksaltStructureGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.generators.ZincblendeStructureGenerator attribute)
(sknano.io.DATAData attribute)
(sknano.io.DATAReader attribute)
(sknano.io.StructureIO attribute)
(sknano.io.XYZData attribute)
(sknano.io.XYZReader attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Fullerene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
unit_cell_mass (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
unit_cell_symmetry_params (sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
(sknano.structures.SWNTMixin attribute)
unit_vector (sknano.core.atoms.Bond attribute)
(sknano.core.math.Vector attribute)
unit_vectors (sknano.core.atoms.Bonds attribute)
UnrolledSWNTGenerator (class in sknano.generators)
UnrolledSWNTMixin (class in sknano.structures)
unset_pbc() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
update_attrs() (sknano.core.atoms.KDTreeAtomsMixin method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
update_bonds() (sknano.core.atoms.KDTreeAtomsMixin method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.StructureAtoms method)
update_Ch_list() (sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.MWNTMixin method)
update_neighbors() (sknano.core.atoms.KDTreeAtomsMixin method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.NeighborAtomsMixin method)
(sknano.core.atoms.StructureAtoms method)
UserList (class in sknano.core)

V

v (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.VelocityAtoms attribute)
(sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Parallelogram attribute)
V1 (sknano.core.atoms.POAV attribute)
v1 (sknano.core.atoms.POAV attribute)
V1 (sknano.core.atoms.POAV1 attribute)
v1 (sknano.core.atoms.POAV1 attribute)
V1 (sknano.core.atoms.POAV2 attribute)
v1 (sknano.core.atoms.POAV2 attribute)
V1 (sknano.core.atoms.POAVR attribute)
v1 (sknano.core.atoms.POAVR attribute)
V2 (sknano.core.atoms.POAV attribute)
v2 (sknano.core.atoms.POAV attribute)
V2 (sknano.core.atoms.POAV1 attribute)
v2 (sknano.core.atoms.POAV1 attribute)
V2 (sknano.core.atoms.POAV2 attribute)
v2 (sknano.core.atoms.POAV2 attribute)
V2 (sknano.core.atoms.POAVR attribute)
v2 (sknano.core.atoms.POAVR attribute)
V3 (sknano.core.atoms.POAV attribute)
v3 (sknano.core.atoms.POAV attribute)
V3 (sknano.core.atoms.POAV1 attribute)
v3 (sknano.core.atoms.POAV1 attribute)
V3 (sknano.core.atoms.POAV2 attribute)
v3 (sknano.core.atoms.POAV2 attribute)
V3 (sknano.core.atoms.POAVR attribute)
v3 (sknano.core.atoms.POAVR attribute)
values() (sknano.core.frozendict method)
VanDerWaalsAtom (class in sknano.core.atoms)
VanDerWaalsAtoms (class in sknano.core.atoms)
var() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
vdw_distance (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
vdw_radius (sknano.generators.BilayerGrapheneGenerator attribute)
(sknano.generators.ConventionalCellGrapheneGenerator attribute)
(sknano.generators.GrapheneGenerator attribute)
(sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.generators.PrimitiveCellGrapheneGenerator attribute)
(sknano.generators.SWNTBundleGenerator attribute)
(sknano.generators.SWNTGenerator attribute)
(sknano.generators.UnrolledSWNTGenerator attribute)
(sknano.structures.BilayerGraphene attribute)
(sknano.structures.ConventionalCellGraphene attribute)
(sknano.structures.Graphene attribute)
(sknano.structures.GrapheneBase attribute)
(sknano.structures.HexagonalGraphene attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.NanoStructureBase attribute)
(sknano.structures.PrimitiveCellGraphene attribute)
(sknano.structures.RectangularGraphene attribute)
(sknano.structures.SWNT attribute)
(sknano.structures.SWNTBundle attribute)
Vector (class in sknano.core.math)
vector (sknano.core.atoms.Bond attribute)
Vectors (class in sknano.core.math)
vectors (sknano.core.atoms.Bonds attribute)
velocities (sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.VelocityAtoms attribute)
VelocityAtom (class in sknano.core.atoms)
VelocityAtoms (class in sknano.core.atoms)
view() (sknano.core.math.Point method)
(sknano.core.math.Vector method)
viz() (sknano.io.DATAData method)
volume (sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.crystallography.Crystal3DLattice attribute)
(sknano.core.geometric_regions.Cone attribute)
(sknano.core.geometric_regions.Cube attribute)
(sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Cylinder attribute)
(sknano.core.geometric_regions.Ellipsoid attribute)
(sknano.core.geometric_regions.Geometric3DRegion attribute)
(sknano.core.geometric_regions.Parallelepiped attribute)
(sknano.core.geometric_regions.Sphere attribute)
Vpi (sknano.core.atoms.POAV attribute)
vpi (sknano.core.atoms.POAV attribute)
Vpi (sknano.core.atoms.POAV1 attribute)
vpi (sknano.core.atoms.POAV1 attribute)
Vpi (sknano.core.atoms.POAV2 attribute)
vpi (sknano.core.atoms.POAV2 attribute)
Vpi (sknano.core.atoms.POAVR attribute)
vpi (sknano.core.atoms.POAVR attribute)
Vv1v2v3 (sknano.core.atoms.POAV attribute)
(sknano.core.atoms.POAV1 attribute)
(sknano.core.atoms.POAV2 attribute)
(sknano.core.atoms.POAVR attribute)
vx (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.VelocityAtoms attribute)
vy (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.VelocityAtoms attribute)
vz (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.VelocityAtoms attribute)

W

w (sknano.core.geometric_regions.Parallelepiped attribute)
wall_diameters (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
wall_radii (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
wall_spacing (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
walls (sknano.generators.MWNTBundleGenerator attribute)
(sknano.generators.MWNTGenerator attribute)
(sknano.structures.MWNT attribute)
(sknano.structures.MWNTBundle attribute)
(sknano.structures.MWNTMixin attribute)
with_doc (class in sknano.core)
wrap_cartesian_coordinate() (sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
wrap_coords() (sknano.core.atoms.BasisAtoms method)
(sknano.core.atoms.MDAtoms method)
(sknano.core.atoms.PBCAtoms method)
(sknano.core.atoms.StructureAtoms method)
wrap_fractional_coordinate() (sknano.core.crystallography.Crystal2DLattice method)
(sknano.core.crystallography.Crystal3DLattice method)
(sknano.core.crystallography.Reciprocal2DLattice method)
(sknano.core.crystallography.Reciprocal3DLattice method)
write() (sknano.io.DATAData method)
(sknano.io.DATAWriter class method)
(sknano.io.StructureWriter class method)
(sknano.io.XYZData method)
(sknano.io.XYZWriter class method)
write_data() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
write_dump() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)
write_xyz() (sknano.core.crystallography.AlphaQuartz method)
(sknano.core.crystallography.BCCStructure method)
(sknano.core.crystallography.CaesiumChlorideStructure method)
(sknano.core.crystallography.Copper method)
(sknano.core.crystallography.Crystal2DStructure method)
(sknano.core.crystallography.Crystal3DStructure method)
(sknano.core.crystallography.CsClStructure method)
(sknano.core.crystallography.CubicClosePackedStructure method)
(sknano.core.crystallography.DiamondStructure method)
(sknano.core.crystallography.FCCStructure method)
(sknano.core.crystallography.Gold method)
(sknano.core.crystallography.HexagonalClosePackedStructure method)
(sknano.core.crystallography.Iron method)
(sknano.core.crystallography.MoS2 method)
(sknano.core.crystallography.NaClStructure method)
(sknano.core.crystallography.RocksaltStructure method)
(sknano.core.crystallography.SphaleriteStructure method)
(sknano.core.crystallography.ZincblendeStructure method)
(sknano.generators.AlphaQuartzGenerator method)
(sknano.generators.BCCStructureGenerator method)
(sknano.generators.BilayerGrapheneGenerator method)
(sknano.generators.CaesiumChlorideStructureGenerator method)
(sknano.generators.ConventionalCellGrapheneGenerator method)
(sknano.generators.CopperGenerator method)
(sknano.generators.DiamondStructureGenerator method)
(sknano.generators.FCCStructureGenerator method)
(sknano.generators.FullereneGenerator method)
(sknano.generators.GoldGenerator method)
(sknano.generators.GrapheneGenerator method)
(sknano.generators.MWNTBundleGenerator method)
(sknano.generators.MWNTGenerator method)
(sknano.generators.MoS2Generator method)
(sknano.generators.PrimitiveCellGrapheneGenerator method)
(sknano.generators.RocksaltStructureGenerator method)
(sknano.generators.SWNTBundleGenerator method)
(sknano.generators.SWNTGenerator method)
(sknano.generators.UnrolledSWNTGenerator method)
(sknano.generators.ZincblendeStructureGenerator method)
(sknano.io.DATAData method)
(sknano.io.DATAReader method)
(sknano.io.StructureIO method)
(sknano.io.XYZData method)
(sknano.io.XYZReader method)
(sknano.structures.BilayerGraphene method)
(sknano.structures.ConventionalCellGraphene method)
(sknano.structures.Fullerene method)
(sknano.structures.Graphene method)
(sknano.structures.GrapheneBase method)
(sknano.structures.HexagonalGraphene method)
(sknano.structures.MWNT method)
(sknano.structures.MWNTBundle method)
(sknano.structures.NanoStructureBase method)
(sknano.structures.PrimitiveCellGraphene method)
(sknano.structures.RectangularGraphene method)
(sknano.structures.SWNT method)
(sknano.structures.SWNTBundle method)

X

x (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtom attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.math.Points attribute)
(sknano.core.molecules.Molecules attribute)
xmax (sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
xmin (sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
xperiodic (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
xs (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
XYZ2DATAConverter (class in sknano.io)
XYZAtom (class in sknano.core.atoms)
XYZAtoms (class in sknano.core.atoms)
XYZData (class in sknano.io)
xyzfile (sknano.io.DATA2XYZConverter attribute)
(sknano.io.XYZ2DATAConverter attribute)
XYZFormatSpec (class in sknano.io)
XYZIOError
XYZReader (class in sknano.io)
XYZWriter (class in sknano.io)

Y

y (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
(sknano.core.atoms.XYZAtom attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.math.Points attribute)
(sknano.core.molecules.Molecules attribute)
ymax (sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
ymin (sknano.core.geometric_regions.Cuboid attribute)
(sknano.core.geometric_regions.Rectangle attribute)
yperiodic (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
ys (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)

Z

Z (sknano.core.atoms.Atom attribute)
(sknano.core.atoms.BasisAtom attribute)
z (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
Z (sknano.core.atoms.ChargedAtom attribute)
(sknano.core.atoms.CNAtom attribute)
(sknano.core.atoms.DipoleAtom attribute)
(sknano.core.atoms.EnergyAtom attribute)
(sknano.core.atoms.ForceAtom attribute)
(sknano.core.atoms.IDAtom attribute)
(sknano.core.atoms.ImageAtom attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.MDAtom attribute)
z (sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
Z (sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
z (sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)
Z (sknano.core.atoms.TypeAtom attribute)
(sknano.core.atoms.VanDerWaalsAtom attribute)
(sknano.core.atoms.VelocityAtom attribute)
(sknano.core.atoms.XYZAtom attribute)
z (sknano.core.atoms.XYZAtom attribute)
(sknano.core.atoms.XYZAtoms attribute)
(sknano.core.math.Points attribute)
(sknano.core.molecules.Molecules attribute)
ZincblendeStructure (class in sknano.core.crystallography)
ZincblendeStructureGenerator (class in sknano.generators)
zmax (sknano.core.geometric_regions.Cuboid attribute)
zmin (sknano.core.geometric_regions.Cuboid attribute)
zperiodic (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.PBCAtom attribute)
(sknano.core.atoms.StructureAtom attribute)
zs (sknano.core.atoms.BasisAtom attribute)
(sknano.core.atoms.BasisAtoms attribute)
(sknano.core.atoms.LatticeAtom attribute)
(sknano.core.atoms.LatticeAtoms attribute)
(sknano.core.atoms.MDAtom attribute)
(sknano.core.atoms.MDAtoms attribute)
(sknano.core.atoms.StructureAtom attribute)
(sknano.core.atoms.StructureAtoms attribute)