Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

_

__call__() (sknano.core.Cached method)

A

A (sknano.core.atoms.POAV attribute)

a (sknano.core.crystallography.Crystal2DLattice attribute)

a1 (sknano.core.crystallography.Crystal2DLattice attribute)

a2 (sknano.core.crystallography.Crystal2DLattice attribute)

a3 (sknano.core.crystallography.Crystal3DLattice attribute)

a_star (sknano.core.crystallography.Reciprocal2DLattice attribute)

add_atom() (sknano.io.XYZ2DATAConverter method)

add_atomtype() (sknano.core.atoms.MDAtoms method)

add_atomtypes() (sknano.core.atoms.MDAtoms method)

add_default_arguments() (in module sknano.scripts)

add_type() (sknano.core.atoms.MDAtoms method)

add_types() (sknano.core.atoms.MDAtoms method)

addCleanup() (sknano.testing.AtomsTestFixture method)

addTypeEqualityFunc() (sknano.testing.AtomsTestFixture method)

all() (sknano.core.math.Point method)

alpha (sknano.core.crystallography.Crystal3DLattice attribute)

alpha_star (sknano.core.crystallography.Reciprocal3DLattice attribute)

AlphaQuartz (class in sknano.core.crystallography)

AlphaQuartzGenerator (class in sknano.generators)

analyze_POAV() (sknano.utils.analysis.StructureAnalyzer method)

angle() (sknano.core.math.Vector method)

angles (sknano.core.atoms.Bonds attribute)

any() (sknano.core.math.Point method)

append() (sknano.core.atoms.Atoms method)

area (sknano.core.crystallography.Crystal2DLattice attribute)

argmax() (sknano.core.math.Point method)

argmin() (sknano.core.math.Point method)

argpartition() (sknano.core.math.Point method)

argsort() (sknano.core.math.Point method)

aselect (sknano.core.atoms.Snapshot attribute)

assert_() (sknano.testing.AtomsTestFixture method)

assertAlmostEqual() (sknano.testing.AtomsTestFixture method)

assertAlmostEquals() (sknano.testing.AtomsTestFixture method)

assertCountEqual() (sknano.testing.AtomsTestFixture method)

assertDictContainsSubset() (sknano.testing.AtomsTestFixture method)

assertDictEqual() (sknano.testing.AtomsTestFixture method)

assertEqual() (sknano.testing.AtomsTestFixture method)

assertEquals() (sknano.testing.AtomsTestFixture method)

assertFalse() (sknano.testing.AtomsTestFixture method)

assertGreater() (sknano.testing.AtomsTestFixture method)

assertGreaterEqual() (sknano.testing.AtomsTestFixture method)

assertIn() (sknano.testing.AtomsTestFixture method)

assertIs() (sknano.testing.AtomsTestFixture method)

assertIsInstance() (sknano.testing.AtomsTestFixture method)

assertIsNone() (sknano.testing.AtomsTestFixture method)

assertIsNot() (sknano.testing.AtomsTestFixture method)

assertIsNotNone() (sknano.testing.AtomsTestFixture method)

assertLess() (sknano.testing.AtomsTestFixture method)

assertLessEqual() (sknano.testing.AtomsTestFixture method)

assertListEqual() (sknano.testing.AtomsTestFixture method)

assertLogs() (sknano.testing.AtomsTestFixture method)

assertMultiLineEqual() (sknano.testing.AtomsTestFixture method)

assertNotAlmostEqual() (sknano.testing.AtomsTestFixture method)

assertNotAlmostEquals() (sknano.testing.AtomsTestFixture method)

assertNotEqual() (sknano.testing.AtomsTestFixture method)

assertNotEquals() (sknano.testing.AtomsTestFixture method)

assertNotIn() (sknano.testing.AtomsTestFixture method)

assertNotIsInstance() (sknano.testing.AtomsTestFixture method)

assertNotRegex() (sknano.testing.AtomsTestFixture method)

assertRaises() (sknano.testing.AtomsTestFixture method)

assertRaisesRegex() (sknano.testing.AtomsTestFixture method)

assertRaisesRegexp() (sknano.testing.AtomsTestFixture method)

assertRegex() (sknano.testing.AtomsTestFixture method)

assertRegexpMatches() (sknano.testing.AtomsTestFixture method)

assertSequenceEqual() (sknano.testing.AtomsTestFixture method)

assertSetEqual() (sknano.testing.AtomsTestFixture method)

assertTrue() (sknano.testing.AtomsTestFixture method)

assertTupleEqual() (sknano.testing.AtomsTestFixture method)

assertWarns() (sknano.testing.AtomsTestFixture method)

assertWarnsRegex() (sknano.testing.AtomsTestFixture method)

assign_unique_ids() (sknano.core.atoms.IDAtoms method)

assign_unique_types() (sknano.core.atoms.MDAtoms method)

astype() (sknano.core.math.Point method)

Atom (class in sknano.core.atoms)

atom1 (sknano.core.atoms.Bond attribute)

atom2 (sknano.core.atoms.Bond attribute)

atom_ids (sknano.core.atoms.IDAtoms attribute)

atom_selection (sknano.core.atoms.Snapshot attribute)

atom_style (sknano.io.DATAFormatSpec attribute)

atom_tree (sknano.core.atoms.KDTreeAtomsMixin attribute)

atomic_masses (in module sknano.core.refdata)

atomic_numbers (in module sknano.core.refdata)

atomID (sknano.core.atoms.IDAtom attribute)

Atoms (class in sknano.core.atoms)

atoms (sknano.core.atoms.Bond attribute)

AtomsTestFixture (class in sknano.testing)

atomtype (sknano.core.atoms.MDAtom attribute)

atomtypes (sknano.core.atoms.MDAtoms attribute)

axis (sknano.core.geometric_regions.Cone attribute)

axis_angle_from_rotation_matrix() (in module sknano.core.math)

B

b (sknano.core.crystallography.Crystal2DLattice attribute)

b1 (sknano.core.crystallography.Crystal2DLattice attribute)

b2 (sknano.core.crystallography.Crystal2DLattice attribute)

b3 (sknano.core.crystallography.Crystal3DLattice attribute)

b_star (sknano.core.crystallography.Reciprocal2DLattice attribute)

base (sknano.core.math.Point attribute)

base_parser (in module sknano.scripts)

BaseClass (class in sknano.core)

basis (sknano.core.crystallography.AlphaQuartz attribute)

BasisAtom (class in sknano.core.atoms)

BasisAtoms (class in sknano.core.atoms)

BCCStructure (class in sknano.core.crystallography)

BCCStructureGenerator (class in sknano.generators)

beta (sknano.core.crystallography.Crystal3DLattice attribute)

beta_star (sknano.core.crystallography.Reciprocal3DLattice attribute)

BilayerGraphene (class in sknano.structures)

BilayerGrapheneGenerator (class in sknano.generators)

Bond (class in sknano.core.atoms)

bond_angle_pairs (sknano.core.atoms.Bonds attribute)

Bonds (class in sknano.core.atoms)

bonds (sknano.core.atoms.KDTreeAtomMixin attribute)

bounds (sknano.core.atoms.BasisAtoms attribute)

BulkGeneratorBase (class in sknano.generators)

bundle_density (sknano.generators.SWNTBundleGenerator attribute)

bundle_geometry (sknano.generators.MWNTBundleGenerator attribute)

bundle_mass (sknano.generators.MWNTBundleGenerator attribute)

bundle_packing (sknano.generators.MWNTBundleGenerator attribute)

byteswap() (sknano.core.math.Point method)

C

c (sknano.core.crystallography.Crystal3DLattice attribute)

C_C (in module sknano.core.refdata)

C_H (in module sknano.core.refdata)

c_star (sknano.core.crystallography.Reciprocal3DLattice attribute)

Cached (class in sknano.core)

CaesiumChlorideStructure (class in sknano.core.crystallography)

CaesiumChlorideStructureGenerator (class in sknano.generators)

cartesian_to_fractional() (sknano.core.crystallography.Crystal2DLattice method)

CCbond (in module sknano.core.refdata)

cell_area (sknano.core.crystallography.Crystal2DLattice attribute)

cell_matrix (sknano.core.crystallography.Crystal2DLattice attribute)

cell_volume (sknano.core.crystallography.Crystal3DLattice attribute)

center (sknano.core.geometric_regions.Circle attribute)

center_center_of_mass() (sknano.core.atoms.BasisAtoms method)

center_centroid() (sknano.core.atoms.BasisAtoms method)

center_CM() (sknano.core.atoms.BasisAtoms method)

center_com() (sknano.core.atoms.BasisAtoms method)

center_of_mass (sknano.core.atoms.BasisAtoms attribute)

centroid (sknano.core.atoms.BasisAtoms attribute)

Ch (sknano.generators.SWNTBundleGenerator attribute)

Ch_list (sknano.generators.MWNTBundleGenerator attribute)

Ch_vec (sknano.generators.SWNTBundleGenerator attribute)

ChargedAtom (class in sknano.core.atoms)

ChargedAtoms (class in sknano.core.atoms)

charges (sknano.core.atoms.ChargedAtoms attribute)

CHbond (in module sknano.core.refdata)

check_type() (in module sknano.core)

chiral_angle (sknano.generators.SWNTBundleGenerator attribute)

chiral_set (sknano.generators.MWNTBundleGenerator attribute)

chiral_type (sknano.generators.SWNTBundleGenerator attribute)

chiral_types (sknano.generators.MWNTBundleGenerator attribute)

choose() (sknano.core.math.Point method)

Circle (class in sknano.core.geometric_regions)

ClassSignature (class in sknano.core)

clear() (sknano.core.atoms.Atoms method)

clip() (sknano.core.math.Point method)

clip_bounds() (sknano.core.atoms.BasisAtoms method)

CM (sknano.core.atoms.BasisAtoms attribute)

cmp_Ch() (in module sknano.structures)

CN (sknano.core.atoms.CNAtom attribute)

CN_counts (sknano.core.atoms.CNAtoms attribute)

CNAtom (class in sknano.core.atoms)

CNAtoms (class in sknano.core.atoms)

column_matrix (sknano.core.math.Point attribute)

com (sknano.core.atoms.BasisAtoms attribute)

comment_line (sknano.io.DATAData attribute)

compress() (sknano.core.math.Point method)

compute_bundle_density() (in module sknano.structures)

compute_centroid() (in module sknano.core.physics)

compute_Ch() (in module sknano.structures)

compute_chiral_angle() (in module sknano.structures)

compute_d() (in module sknano.structures)

compute_dR() (in module sknano.structures)

compute_dt() (in module sknano.structures)

compute_electronic_type() (in module sknano.structures)

compute_inertia_tensor() (in module sknano.core.physics)

compute_linear_mass_density() (in module sknano.structures)

compute_Lz() (in module sknano.structures)

compute_M() (in module sknano.structures)

compute_N() (in module sknano.structures)

compute_Natoms() (in module sknano.structures)

compute_Natoms_per_tube() (in module sknano.structures)

compute_Natoms_per_unit_cell() (in module sknano.structures)

compute_POAVs() (sknano.core.atoms.MDAtoms method)

compute_psi() (in module sknano.structures)

compute_R() (in module sknano.structures)

compute_R_chiral_angle() (in module sknano.structures)

compute_rdf() (sknano.core.atoms.MDAtoms method)

compute_rt() (in module sknano.structures)

compute_symmetry_operation() (in module sknano.structures)

compute_T() (in module sknano.structures)

compute_t1() (in module sknano.structures)

compute_t2() (in module sknano.structures)

compute_tau() (in module sknano.structures)

compute_tube_mass() (in module sknano.structures)

compute_unit_cell_mass() (in module sknano.structures)

Cone (class in sknano.core.geometric_regions)

conj() (sknano.core.math.Point method)

conjugate() (sknano.core.math.Point method)

consume() (in module sknano.core)

contains() (sknano.core.geometric_regions.Circle method)

ConventionalCellGraphene (class in sknano.structures)

ConventionalCellGrapheneGenerator (class in sknano.generators)

convert() (sknano.io.DATA2XYZConverter method)

coordination_counts (sknano.core.atoms.CNAtoms attribute)

coordination_number_counts (sknano.core.atoms.CNAtoms attribute)

coordination_numbers (sknano.core.atoms.CNAtoms attribute)

coords (sknano.core.atoms.BasisAtoms attribute)

Copper (class in sknano.core.crystallography)

CopperGenerator (class in sknano.generators)

copy() (sknano.core.atoms.Atoms method)

cos_alpha (sknano.core.crystallography.Crystal3DLattice attribute)

cos_alpha_star (sknano.core.crystallography.Crystal3DLattice attribute)

cos_beta (sknano.core.crystallography.Crystal3DLattice attribute)

cos_beta_star (sknano.core.crystallography.Crystal3DLattice attribute)

cos_gamma (sknano.core.crystallography.Crystal2DLattice attribute)

cos_gamma_star (sknano.core.crystallography.Crystal2DLattice attribute)

count() (sknano.core.atoms.Atoms method)

countTestCases() (sknano.testing.AtomsTestFixture method)

cross() (sknano.core.math.Vector method)

Crystal2DLattice (class in sknano.core.crystallography)

Crystal2DStructure (class in sknano.core.crystallography)

Crystal3DLattice (class in sknano.core.crystallography)

Crystal3DStructure (class in sknano.core.crystallography)

crystal_cell (sknano.core.crystallography.AlphaQuartz attribute)

CsClStructure (in module sknano.core.crystallography)

ctypes (sknano.core.math.Point attribute)

Cube (class in sknano.core.geometric_regions)

cubic() (sknano.core.crystallography.Crystal3DLattice class method)

CubicClosePackedStructure (class in sknano.core.crystallography)

Cuboid (class in sknano.core.geometric_regions)

cull() (sknano.core.atoms.Trajectory method)

cumprod() (sknano.core.math.Point method)

cumsum() (sknano.core.math.Point method)

cyclic_pairs() (in module sknano.core)

Cylinder (class in sknano.core.geometric_regions)

D

d (sknano.generators.SWNTBundleGenerator attribute)

data (sknano.core.math.Point attribute)

DATA2XYZConverter (class in sknano.io)

DATAData (class in sknano.io)

datafile (sknano.io.DATA2XYZConverter attribute)

DATAFormatSpec (class in sknano.io)

DATAIOError

DATAReader (class in sknano.io)

DATAWriter (class in sknano.io)

debug() (sknano.testing.AtomsTestFixture method)

dedupe() (in module sknano.core)

defaultTestResult() (sknano.testing.AtomsTestFixture method)

delete() (sknano.io.DATAData method)

deprecated() (in module sknano.core)

diagonal() (sknano.core.math.Point method)

DiamondStructure (class in sknano.core.crystallography)

DiamondStructureGenerator (class in sknano.generators)

dipole_moments (sknano.core.atoms.DipoleAtoms attribute)

DipoleAtom (class in sknano.core.atoms)

DipoleAtoms (class in sknano.core.atoms)

Direct2DLatticeMixin (class in sknano.core.crystallography)

Direct3DLatticeMixin (class in sknano.core.crystallography)

distances (sknano.core.atoms.KDTreeAtomsMixin attribute)

doCleanups() (sknano.testing.AtomsTestFixture method)

dot() (sknano.core.math.Point method)

dotproduct() (in module sknano.core)

dr (sknano.core.atoms.BasisAtom attribute)

dR (sknano.generators.SWNTBundleGenerator attribute)

dt (sknano.generators.MWNTBundleGenerator attribute)

dt_list (sknano.generators.MWNTBundleGenerator attribute)

dtype (sknano.core.math.Point attribute)

dump() (sknano.core.math.Point method)

dumpobj() (in module sknano.core)

dumps() (sknano.core.math.Point method)

E

electronic_type (sknano.generators.SWNTBundleGenerator attribute)

element (sknano.core.atoms.Atom attribute)

element1 (sknano.generators.BilayerGrapheneGenerator attribute)

element2 (sknano.generators.BilayerGrapheneGenerator attribute)

element_data (in module sknano.core.refdata)

element_names (in module sknano.core.refdata)

element_symbols (in module sknano.core.refdata)

elements (sknano.core.atoms.Atoms attribute)

Ellipse (class in sknano.core.geometric_regions)

Ellipsoid (class in sknano.core.geometric_regions)

EnergyAtom (class in sknano.core.atoms)

EnergyAtoms (class in sknano.core.atoms)

etotal (sknano.core.atoms.EnergyAtom attribute)

euclidean_distance() (sknano.core.math.Point method)

extend() (sknano.core.atoms.Atoms method)

F

f (sknano.core.atoms.ForceAtom attribute)

fail() (sknano.testing.AtomsTestFixture method)

failIf() (sknano.testing.AtomsTestFixture method)

failIfAlmostEqual() (sknano.testing.AtomsTestFixture method)

failIfEqual() (sknano.testing.AtomsTestFixture method)

failUnless() (sknano.testing.AtomsTestFixture method)

failUnlessAlmostEqual() (sknano.testing.AtomsTestFixture method)

failUnlessEqual() (sknano.testing.AtomsTestFixture method)

failUnlessRaises() (sknano.testing.AtomsTestFixture method)

FCCStructure (class in sknano.core.crystallography)

FCCStructureGenerator (class in sknano.generators)

fill() (sknano.core.math.Point method)

filter() (sknano.core.atoms.Atoms method)

filter_Ch() (in module sknano.structures)

filter_Ch_list() (in module sknano.structures)

filter_ids() (sknano.core.atoms.IDAtoms method)

filtered() (sknano.core.atoms.Atoms method)

filtered_ids() (sknano.core.atoms.IDAtoms method)

find_target_atom() (in module sknano.utils.analysis)

first_neighbors (sknano.core.atoms.MDAtom attribute)

first_true() (in module sknano.core)

fix_Lx (sknano.generators.UnrolledSWNTGenerator attribute)

fix_Lz (sknano.generators.SWNTBundleGenerator attribute)

flags (sknano.core.math.Point attribute)

flat (sknano.core.math.Point attribute)

flatten() (in module sknano.core)

fmtstr (sknano.core.atoms.Atom attribute)

ForceAtom (class in sknano.core.atoms)

ForceAtoms (class in sknano.core.atoms)

forces (sknano.core.atoms.ForceAtoms attribute)

format_spec() (sknano.io.DATAData class method)

fractional_matrix (sknano.core.crystallography.Crystal2DLattice attribute)

fractional_to_cartesian() (sknano.core.crystallography.Crystal2DLattice method)

from_conventional_cell() (sknano.generators.BilayerGrapheneGenerator method)

from_primitive_cell() (sknano.generators.BilayerGrapheneGenerator method)

from_pymatgen_structure() (sknano.core.crystallography.AlphaQuartz method)

from_spacegroup() (sknano.core.crystallography.AlphaQuartz method)

frozendict (class in sknano.core)

Fullerene (class in sknano.structures)

FullereneGenerator (class in sknano.generators)

fx (sknano.core.atoms.ForceAtom attribute)

fy (sknano.core.atoms.ForceAtom attribute)

fz (sknano.core.atoms.ForceAtom attribute)

G

gamma (sknano.core.crystallography.Crystal2DLattice attribute)

gamma_star (sknano.core.crystallography.Reciprocal2DLattice attribute)

generate() (sknano.generators.AlphaQuartzGenerator method)

generate_atoms() (in module sknano.testing)

generate_bundle() (sknano.generators.MWNTBundleGenerator method)

generate_bundle_coords() (sknano.generators.MWNTBundleGenerator method)

generate_bundle_from_bundle_coords() (sknano.generators.MWNTBundleGenerator method)

generate_Ch_list() (in module sknano.structures)

generate_Ch_property_grid() (in module sknano.structures)

generate_dt_mask() (sknano.generators.MWNTBundleGenerator method)

generate_fname() (sknano.generators.BilayerGrapheneGenerator method)

generate_structure() (in module sknano.testing)

generate_unit_cell() (sknano.generators.SWNTBundleGenerator method)

GeneratorBase (class in sknano.generators)

GeneratorTestFixtures (class in sknano.testing)

Geometric2DRegion (class in sknano.core.geometric_regions)

Geometric3DRegion (class in sknano.core.geometric_regions)

GeometricRegion (class in sknano.core.geometric_regions)

GeometricTransformsMixin (class in sknano.core.geometric_regions)

get() (sknano.core.frozendict method)

get_atom() (sknano.core.atoms.IDAtoms method)

get_atoms() (sknano.core.atoms.Atoms method)

get_atomtypes() (sknano.core.atoms.MDAtoms method)

get_Ch_indices() (in module sknano.structures)

get_Ch_type() (in module sknano.structures)

get_coords() (sknano.core.atoms.BasisAtom method)

get_fname() (in module sknano.core)

get_fpath() (in module sknano.core)

get_lattice_parameter() (sknano.core.crystallography.BCCStructure method)

get_molecules() (sknano.core.molecules.Molecules method)

get_neighbors() (sknano.core.atoms.MDAtom method)

get_object_signature() (in module sknano.core)

get_POAV_attr() (sknano.core.atoms.MDAtoms method)

get_snapshot() (sknano.core.atoms.Trajectory method)

get_types() (sknano.core.atoms.MDAtoms method)

get_wall() (sknano.generators.MWNTBundleGenerator method)

getatomattr() (sknano.core.atoms.Atoms method)

getdoc() (sknano.core.method_func method)

getfield() (sknano.core.math.Point method)

Gold (class in sknano.core.crystallography)

GoldGenerator (class in sknano.generators)

grams_per_amu (in module sknano.core.refdata)

grams_per_Da (in module sknano.core.refdata)

Graphene (class in sknano.structures)

GrapheneBase (class in sknano.structures)

GrapheneGenerator (class in sknano.generators)

GrapheneMixin (class in sknano.structures)

grouper() (in module sknano.core)

H

H (sknano.core.atoms.POAV attribute)

headers (sknano.io.DATAData attribute)

hexagonal() (sknano.core.crystallography.Crystal2DLattice class method)

I

i (sknano.core.atoms.ImageAtom attribute)

id (sknano.core.atoms.IDAtom attribute)

id() (sknano.testing.AtomsTestFixture method)

IDAtom (class in sknano.core.atoms)

IDAtoms (class in sknano.core.atoms)

ids (sknano.core.atoms.IDAtoms attribute)

imag (sknano.core.math.Point attribute)

ImageAtom (class in sknano.core.atoms)

ImageAtoms (class in sknano.core.atoms)

images (sknano.core.atoms.ImageAtoms attribute)

index() (sknano.core.atoms.Atoms method)

inertia_tensor (sknano.core.atoms.BasisAtoms attribute)

insert() (sknano.core.atoms.Atoms method)

Iron (class in sknano.core.crystallography)

isdisjoint() (sknano.core.ListBasedSet method)

item() (sknano.core.math.Point method)

items() (sknano.core.frozendict method)

itemset() (sknano.core.math.Point method)

itemsize (sknano.core.math.Point attribute)

iter_except() (in module sknano.core)

ix (sknano.core.atoms.ImageAtom attribute)

iy (sknano.core.atoms.ImageAtom attribute)

iz (sknano.core.atoms.ImageAtom attribute)

K

KDTreeAtomMixin (class in sknano.core.atoms)

KDTreeAtomsMixin (class in sknano.core.atoms)

ke (sknano.core.atoms.EnergyAtom attribute)

keys() (sknano.core.frozendict method)

kinetic_energies (sknano.core.atoms.EnergyAtoms attribute)

kNN (sknano.core.atoms.KDTreeAtomsMixin attribute)

L

lattice (sknano.core.atoms.BasisAtom attribute)

lattice_parameters (sknano.core.crystallography.Crystal2DLattice attribute)

lattice_vectors (sknano.core.crystallography.Crystal2DLattice attribute)

LatticeAtom (class in sknano.core.atoms)

LatticeAtoms (class in sknano.core.atoms)

length (sknano.core.atoms.Bond attribute)

lengths (sknano.core.atoms.Bonds attribute)

lengths_and_angles (sknano.core.crystallography.Crystal2DLattice attribute)

linear_mass_density (sknano.generators.SWNTBundleGenerator attribute)

ListBasedSet (class in sknano.core)

listdir() (in module sknano.core)

listdir_dirnames() (in module sknano.core)

listdir_fnames() (in module sknano.core)

loadobj() (in module sknano.core)

longMessage (sknano.testing.AtomsTestFixture attribute)

Lx (sknano.generators.MWNTBundleGenerator attribute)

Ly (sknano.generators.MWNTBundleGenerator attribute)

Lz (sknano.generators.SWNTBundleGenerator attribute)

Lz_list (sknano.generators.MWNTBundleGenerator attribute)

M

m (sknano.core.atoms.Atom attribute)

M (sknano.core.atoms.Atoms attribute)

m (sknano.core.atoms.BasisAtom attribute)

M (sknano.core.atoms.BasisAtoms attribute)

m (sknano.core.atoms.ChargedAtom attribute)

M (sknano.core.atoms.ChargedAtoms attribute)

m (sknano.core.atoms.CNAtom attribute)

M (sknano.core.atoms.CNAtoms attribute)

m (sknano.core.atoms.DipoleAtom attribute)

M (sknano.core.atoms.DipoleAtoms attribute)

m (sknano.core.atoms.EnergyAtom attribute)

M (sknano.core.atoms.EnergyAtoms attribute)

m (sknano.core.atoms.ForceAtom attribute)

M (sknano.core.atoms.ForceAtoms attribute)

m (sknano.core.atoms.IDAtom attribute)

M (sknano.core.atoms.IDAtoms attribute)

m (sknano.core.atoms.ImageAtom attribute)

M (sknano.core.atoms.ImageAtoms attribute)

m (sknano.core.atoms.LatticeAtom attribute)

M (sknano.core.atoms.LatticeAtoms attribute)

m (sknano.core.atoms.MDAtom attribute)

M (sknano.core.atoms.MDAtoms attribute)

m (sknano.core.atoms.PBCAtom attribute)

M (sknano.core.atoms.PBCAtoms attribute)

m (sknano.core.atoms.POAV1 attribute)

M (sknano.core.atoms.StructureAtoms attribute)

m (sknano.core.atoms.TypeAtom attribute)

M (sknano.core.atoms.TypeAtoms attribute)

m (sknano.core.atoms.VanDerWaalsAtom attribute)

M (sknano.core.atoms.VanDerWaalsAtoms attribute)

m (sknano.core.atoms.VelocityAtom attribute)

M (sknano.core.atoms.VelocityAtoms attribute)

m (sknano.core.atoms.XYZAtom attribute)

M (sknano.core.atoms.XYZAtoms attribute)

m (sknano.generators.SWNTBundleGenerator attribute)

M (sknano.generators.SWNTGenerator attribute)

m (sknano.generators.SWNTGenerator attribute)

M (sknano.generators.UnrolledSWNTGenerator attribute)

m (sknano.generators.UnrolledSWNTGenerator attribute)

M (sknano.structures.SWNT attribute)

m (sknano.structures.SWNT attribute)

M (sknano.structures.SWNTBundle attribute)

m (sknano.structures.SWNTBundle attribute)

M (sknano.structures.SWNTMixin attribute)

m (sknano.structures.SWNTMixin attribute)

mag (sknano.core.math.Vector attribute)

magnitude (sknano.core.math.Vector attribute)

make_sig() (in module sknano.core)

make_supercell() (sknano.core.crystallography.AlphaQuartz method)

map() (sknano.io.DATAData method)

map_Ch() (in module sknano.structures)

mapatomattr() (sknano.core.atoms.Atoms method)

mass (sknano.core.atoms.Atom attribute)

masses (sknano.core.atoms.Atoms attribute)

matrix (sknano.core.crystallography.Crystal2DLattice attribute)

max() (sknano.core.math.Point method)

max_wall_diameter (sknano.generators.MWNTBundleGenerator attribute)

max_walls (sknano.generators.MWNTBundleGenerator attribute)

maxbox() (sknano.io.DATAData method)

maxDiff (sknano.testing.AtomsTestFixture attribute)

maxtype() (sknano.io.DATAData method)

MDAtom (class in sknano.core.atoms)

MDAtoms (class in sknano.core.atoms)

mean() (sknano.core.math.Point method)

mean_angle (sknano.core.atoms.Bonds attribute)

mean_length (sknano.core.atoms.Bonds attribute)

measure (sknano.core.geometric_regions.Circle attribute)

memoize() (in module sknano.core)

method_func (class in sknano.core)

metric_tensor (sknano.core.crystallography.Crystal2DLattice attribute)

min() (sknano.core.math.Point method)

min_wall_diameter (sknano.generators.MWNTBundleGenerator attribute)

misalignment_angles (sknano.core.atoms.POAV attribute)

mol (sknano.core.atoms.IDAtom attribute)

mol_ids (sknano.core.atoms.IDAtoms attribute)

Molecule (class in sknano.core.molecules)

molecule_ids (sknano.core.atoms.IDAtoms attribute)

moleculeID (sknano.core.atoms.IDAtom attribute)

Molecules (class in sknano.core.molecules)

mols (sknano.core.atoms.IDAtoms attribute)

monoclinic() (sknano.core.crystallography.Crystal3DLattice class method)

MoS2 (class in sknano.core.crystallography)

MoS2Generator (class in sknano.generators)

mro() (sknano.core.Cached method)

MWNT (class in sknano.structures)

MWNTBundle (class in sknano.structures)

MWNTBundleGenerator (class in sknano.generators)

MWNTGenerator (class in sknano.generators)

MWNTMixin (class in sknano.structures)

N

n (sknano.core.atoms.POAV1 attribute)

N (sknano.generators.BilayerGrapheneGenerator attribute)

n (sknano.generators.SWNTBundleGenerator attribute)

N (sknano.generators.SWNTGenerator attribute)

n (sknano.generators.SWNTGenerator attribute)

N (sknano.generators.UnrolledSWNTGenerator attribute)

n (sknano.generators.UnrolledSWNTGenerator attribute)

N (sknano.structures.BilayerGraphene attribute)

n (sknano.structures.SWNT attribute)

N (sknano.structures.SWNTBundle attribute)

n (sknano.structures.SWNTBundle attribute)

N (sknano.structures.SWNTMixin attribute)

n (sknano.structures.SWNTMixin attribute)

n1 (sknano.core.atoms.POAV2 attribute)

n2 (sknano.core.atoms.POAV2 attribute)

n3 (sknano.core.atoms.POAV2 attribute)

NaClStructure (in module sknano.core.crystallography)

nanogen() (in module sknano.scripts)

nanogen_parser() (in module sknano.scripts)

NanoStructureBase (class in sknano.structures)

NanotubeBundleBase (class in sknano.structures)

NanotubeBundleMixin (class in sknano.structures)

Natoms (sknano.core.atoms.Atoms attribute)

Natoms_list (sknano.generators.MWNTBundleGenerator attribute)

Natoms_per_bundle (sknano.generators.MWNTBundleGenerator attribute)

Natoms_per_layer (sknano.generators.BilayerGrapheneGenerator attribute)

Natoms_per_tube (sknano.generators.MWNTBundleGenerator attribute)

Natoms_per_unit_cell (sknano.generators.BilayerGrapheneGenerator attribute)

Natoms_per_wall (sknano.generators.MWNTBundleGenerator attribute)

Nbonds (sknano.core.atoms.Bonds attribute)

nbytes (sknano.core.math.Point attribute)

ncycles() (in module sknano.core)

ndim (sknano.core.math.Point attribute)

nearest_neighbors (sknano.core.atoms.KDTreeAtomsMixin attribute)

neighbor_counts() (sknano.core.atoms.KDTreeAtomsMixin method)

neighbor_distances (sknano.core.atoms.KDTreeAtomMixin attribute)

NeighborAtomMixin (class in sknano.core.atoms)

NeighborAtomsMixin (class in sknano.core.atoms)

neighbors (sknano.core.atoms.KDTreeAtomMixin attribute)

newbyteorder() (sknano.core.math.Point method)

newxyz() (sknano.io.DATAData method)

nlayers (sknano.generators.UnrolledSWNTGenerator attribute)

Nmolecules (sknano.core.molecules.Molecules attribute)

NN (sknano.core.atoms.KDTreeAtomMixin attribute)

NNrc (sknano.core.atoms.KDTreeAtomsMixin attribute)

NoInstances (class in sknano.core)

nonzero() (sknano.core.math.Point method)

norm (sknano.core.math.Vector attribute)

normalize() (sknano.core.math.Vector method)

norms (sknano.core.math.Vectors attribute)

nselect (sknano.core.atoms.Snapshot attribute)

nselected (sknano.core.atoms.Snapshot attribute)

Nsnaps (sknano.core.atoms.Trajectory attribute)

nth() (in module sknano.core)

Ntubes (sknano.generators.MWNTBundleGenerator attribute)

Ntypes (sknano.core.atoms.MDAtoms attribute)

Nwalls (sknano.generators.MWNTBundleGenerator attribute)

nx (sknano.generators.MWNTBundleGenerator attribute)

ny (sknano.generators.MWNTBundleGenerator attribute)

nz (sknano.generators.SWNTBundleGenerator attribute)

nz_list (sknano.generators.MWNTBundleGenerator attribute)

O

o (sknano.core.geometric_regions.Parallelepiped attribute)

oblique() (sknano.core.crystallography.Crystal2DLattice class method)

optional_debug() (in module sknano.core)

ordinal_form() (in module sknano.core)

ortho_matrix (sknano.core.crystallography.Crystal2DLattice attribute)

orthorhombic() (sknano.core.crystallography.Crystal3DLattice class method)

P

p (sknano.core.atoms.DipoleAtom attribute)

P (sknano.core.atoms.DipoleAtoms attribute)

p (sknano.core.math.Vector attribute)

p0 (sknano.core.math.Vector attribute)

p1 (sknano.core.geometric_regions.Cone attribute)

p2 (sknano.core.geometric_regions.Cone attribute)

p3 (sknano.core.geometric_regions.Triangle attribute)

padnone() (in module sknano.core)

pairwise() (in module sknano.core)

Parallelepiped (class in sknano.core.geometric_regions)

Parallelogram (class in sknano.core.geometric_regions)

partition() (in module sknano.core)

pbc (sknano.core.atoms.BasisAtom attribute)

PBCAtom (class in sknano.core.atoms)

PBCAtoms (class in sknano.core.atoms)

pe (sknano.core.atoms.EnergyAtom attribute)

pluralize() (in module sknano.core)

pmax (sknano.core.geometric_regions.Cuboid attribute)

pmin (sknano.core.geometric_regions.Cuboid attribute)

POAV (class in sknano.core.atoms)

POAV1 (class in sknano.core.atoms)

POAV2 (class in sknano.core.atoms)

POAVAtomMixin (class in sknano.core.atoms)

POAVAtomsMixin (class in sknano.core.atoms)

POAVR (class in sknano.core.atoms)

Point (class in sknano.core.math)

PointGroup (class in sknano.utils.symmetry_groups)

Points (class in sknano.core.math)

pop() (sknano.core.atoms.Atoms method)

potential_energies (sknano.core.atoms.EnergyAtoms attribute)

powerset() (in module sknano.core)

PrimitiveCellGraphene (class in sknano.structures)

PrimitiveCellGrapheneGenerator (class in sknano.generators)

prod() (sknano.core.math.Point method)

projection() (sknano.core.math.Vector method)

ptp() (sknano.core.math.Point method)

put() (sknano.core.math.Point method)

px (sknano.core.atoms.DipoleAtom attribute)

py (sknano.core.atoms.DipoleAtom attribute)

pymatgen_structure() (in module sknano.core.crystallography)

pyramidalization_angles (sknano.core.atoms.POAV attribute)

pz (sknano.core.atoms.DipoleAtom attribute)

Q

q (sknano.core.atoms.ChargedAtom attribute)

quantify() (in module sknano.core)

query_atom_tree() (sknano.core.atoms.KDTreeAtomsMixin method)

query_ball_point() (sknano.core.atoms.KDTreeAtomsMixin method)

R

r (sknano.core.atoms.BasisAtom attribute)

R (sknano.generators.SWNTBundleGenerator attribute)

r0 (sknano.core.atoms.BasisAtom attribute)

R1 (sknano.core.atoms.POAV attribute)

r1 (sknano.generators.BilayerGrapheneGenerator attribute)

R2 (sknano.core.atoms.POAV attribute)

r2 (sknano.generators.BilayerGrapheneGenerator attribute)

R3 (sknano.core.atoms.POAV attribute)

r_vdw (sknano.core.atoms.VanDerWaalsAtom attribute)

random_combination() (in module sknano.core)

random_combination_with_replacement() (in module sknano.core)

random_permutation() (in module sknano.core)

random_product() (in module sknano.core)

ravel() (sknano.core.math.Point method)

read() (sknano.io.DATAData method)

read_data() (sknano.core.crystallography.AlphaQuartz method)

read_dump() (sknano.core.crystallography.AlphaQuartz method)

read_xyz() (sknano.core.crystallography.AlphaQuartz method)

real (sknano.core.math.Point attribute)

Reciprocal2DLattice (class in sknano.core.crystallography)

Reciprocal2DLatticeMixin (class in sknano.core.crystallography)

Reciprocal3DLattice (class in sknano.core.crystallography)

Reciprocal3DLatticeMixin (class in sknano.core.crystallography)

reciprocal_lattice (sknano.core.crystallography.Crystal2DLattice attribute)

reciprocal_v1 (sknano.core.atoms.POAV attribute)

reciprocal_v2 (sknano.core.atoms.POAV attribute)

reciprocal_v3 (sknano.core.atoms.POAV attribute)

Rectangle (class in sknano.core.geometric_regions)

rectangular() (sknano.core.crystallography.Crystal2DLattice class method)

RectangularGraphene (in module sknano.structures)

reference_snapshot (sknano.core.atoms.Trajectory attribute)

reflection_matrix() (in module sknano.core.math)

rejection() (sknano.core.math.Vector method)

remove() (sknano.core.atoms.Atoms method)

reorder() (sknano.io.DATAData method)

repeat() (sknano.core.math.Point method)

repeatfunc() (in module sknano.core)

replace() (sknano.io.DATAData method)

reset() (sknano.testing.Timer method)

reshape() (sknano.core.math.Point method)

resize() (sknano.core.math.Point method)

reverse() (sknano.core.atoms.Atoms method)

rezero() (sknano.core.atoms.Atom method)

rezero_array() (in module sknano.core)

rezero_components() (sknano.core.math.Vector method)

rezero_coords() (sknano.core.atoms.BasisAtom method)

rezero_xyz() (sknano.core.atoms.BasisAtom method)

RocksaltStructure (class in sknano.core.crystallography)

RocksaltStructureGenerator (class in sknano.generators)

rotate() (in module sknano.core.math)

rotation_matrix() (in module sknano.core.math)

round() (sknano.core.math.Point method)

roundrobin() (in module sknano.core)

row_matrix (sknano.core.math.Point attribute)

rs (sknano.core.atoms.BasisAtom attribute)

rt (sknano.generators.MWNTBundleGenerator attribute)

rt_list (sknano.generators.MWNTBundleGenerator attribute)

run() (sknano.testing.AtomsTestFixture method)

running (sknano.testing.Timer attribute)

rx (sknano.core.geometric_regions.Ellipse attribute)

Rx() (in module sknano.core.math)

ry (sknano.core.geometric_regions.Ellipse attribute)

Ry() (in module sknano.core.math)

rz (sknano.core.geometric_regions.Ellipsoid attribute)

Rz() (in module sknano.core.math)

S

save() (sknano.generators.AlphaQuartzGenerator method)

scale() (sknano.core.math.Vector method)

scaling_matrix (sknano.core.crystallography.AlphaQuartz attribute)

scaling_matrix() (in module sknano.core.math)

searchsorted() (sknano.core.math.Point method)

second_neighbors (sknano.core.atoms.MDAtom attribute)

sections (sknano.io.DATAData attribute)

selected (sknano.core.atoms.Snapshot attribute)

set_neighbors() (sknano.core.atoms.MDAtom method)

set_pbc() (sknano.core.atoms.BasisAtoms method)

setfield() (sknano.core.math.Point method)

setflags() (sknano.core.math.Point method)

setUp() (sknano.testing.AtomsTestFixture method)

setUpClass() (sknano.testing.AtomsTestFixture method)

shape (sknano.core.math.Point attribute)

shortDescription() (sknano.testing.AtomsTestFixture method)

sigma_pi_angles (sknano.core.atoms.POAV attribute)

sin_alpha (sknano.core.crystallography.Crystal3DLattice attribute)

sin_alpha_star (sknano.core.crystallography.Crystal3DLattice attribute)

sin_beta (sknano.core.crystallography.Crystal3DLattice attribute)

sin_beta_star (sknano.core.crystallography.Crystal3DLattice attribute)

sin_gamma (sknano.core.crystallography.Crystal2DLattice attribute)

sin_gamma_star (sknano.core.crystallography.Crystal2DLattice attribute)

Singleton (class in sknano.core)

size (sknano.core.math.Point attribute)

skipTest() (sknano.testing.AtomsTestFixture method)

sknano() (in module sknano.scripts)

sknano.apps (module)

sknano.apps.nanogen_gui (module)

sknano.core (module)

sknano.core.atoms (module)

sknano.core.crystallography (module)

sknano.core.geometric_regions (module)

sknano.core.math (module)

sknano.core.molecules (module)

sknano.core.physics (module)

sknano.core.refdata (module)

sknano.data (module)

sknano.generators (module)

sknano.io (module)

sknano.scripts (module)

sknano.scripts.nanogen (module)

sknano.scripts.nanogenui (module)

sknano.structures (module)

sknano.testing (module)

sknano.utils (module)

sknano.utils.analysis (module)

sknano.utils.symmetry_groups (module)

sknano_parser() (in module sknano.scripts)

Snapshot (class in sknano.core.atoms)

snapshots (sknano.core.atoms.Trajectory attribute)

sort() (sknano.core.atoms.Atoms method)

SpaceGroup (class in sknano.utils.symmetry_groups)

SphaleriteStructure (in module sknano.core.crystallography)

Sphere (class in sknano.core.geometric_regions)

Square (class in sknano.core.geometric_regions)

square() (sknano.core.crystallography.Crystal2DLattice class method)

squeeze() (sknano.core.math.Point method)

start() (sknano.testing.Timer method)

std() (sknano.core.math.Point method)

stop() (sknano.testing.Timer method)

strides (sknano.core.math.Point attribute)

structure (sknano.core.crystallography.AlphaQuartz attribute)

structure_data (sknano.core.crystallography.AlphaQuartz attribute)

STRUCTURE_GENERATORS (in module sknano.generators)

StructureAnalyzer (class in sknano.utils.analysis)

StructureAtom (class in sknano.core.atoms)

StructureAtoms (class in sknano.core.atoms)

StructureConverter (class in sknano.io)

StructureFormatSpec (class in sknano.io)

StructureIO (class in sknano.io)

StructureIOError

StructureReader (class in sknano.io)

StructureWriter (class in sknano.io)

subTest() (sknano.testing.AtomsTestFixture method)

sum() (sknano.core.math.Point method)

supercell_lattice_points() (in module sknano.core.crystallography)

swapaxes() (sknano.core.math.Point method)

SWNT (class in sknano.structures)

SWNTBundle (class in sknano.structures)

SWNTBundleGenerator (class in sknano.generators)

SWNTGenerator (class in sknano.generators)

SWNTMixin (class in sknano.structures)

symbol (sknano.core.atoms.Atom attribute)

symbols (sknano.core.atoms.Atoms attribute)

T

T (sknano.core.atoms.POAV attribute)

t (sknano.core.atoms.POAV attribute)

T (sknano.core.atoms.POAV1 attribute)

t (sknano.core.atoms.POAV1 attribute)

T (sknano.core.atoms.POAV2 attribute)

t (sknano.core.atoms.POAV2 attribute)

T (sknano.core.atoms.POAVR attribute)

t (sknano.core.atoms.POAVR attribute)

T (sknano.core.math.Point attribute)

t0_snapshot (sknano.core.atoms.Trajectory attribute)

t1 (sknano.generators.SWNTBundleGenerator attribute)

t2 (sknano.generators.SWNTBundleGenerator attribute)

T_list (sknano.generators.MWNTBundleGenerator attribute)

tabulate() (in module sknano.core)

take() (in module sknano.core)

tearDown() (sknano.testing.AtomsTestFixture method)

tearDownClass() (sknano.testing.AtomsTestFixture method)

tetragonal() (sknano.core.crystallography.Crystal3DLattice class method)

third_neighbors (sknano.core.atoms.MDAtom attribute)

time_selection (sknano.core.atoms.Trajectory attribute)

Timer (class in sknano.testing)

timestep_index() (sknano.core.atoms.Trajectory method)

timesteps (sknano.core.atoms.Trajectory attribute)

timethis() (in module sknano.core)

tobytes() (sknano.core.math.Point method)

todict() (sknano.core.atoms.Atom method)

tofile() (sknano.core.math.Point method)

tolist() (sknano.core.math.Point method)

tostring() (sknano.core.math.Point method)

total_energies (sknano.core.atoms.EnergyAtoms attribute)

totient_func() (in module sknano.core.math)

trace() (sknano.core.math.Point method)

Trajectory (class in sknano.core.atoms)

transform_lattice() (sknano.core.crystallography.AlphaQuartz method)

transformation_matrix() (in module sknano.core.math)

translate() (sknano.core.atoms.Atom method)

transpose() (sknano.core.math.Point method)

Triangle (class in sknano.core.geometric_regions)

triclinic() (sknano.core.crystallography.Crystal3DLattice class method)

tselect (sknano.core.atoms.Snapshot attribute)

tube_length (sknano.generators.SWNTBundleGenerator attribute)

tube_mass (sknano.generators.MWNTBundleGenerator attribute)

Tvec (sknano.generators.SWNTBundleGenerator attribute)

type (sknano.core.atoms.MDAtom attribute)

typeassert() (in module sknano.core)

TypeAtom (class in sknano.core.atoms)

TypeAtoms (class in sknano.core.atoms)

typed_property() (in module sknano.core)

typemap (sknano.core.atoms.MDAtoms attribute)

types (sknano.core.atoms.MDAtoms attribute)

U

u (sknano.core.geometric_regions.Parallelepiped attribute)

unique_elements() (in module sknano.core)

unit_cell (sknano.core.crystallography.AlphaQuartz attribute)

unit_cell_mass (sknano.generators.SWNTBundleGenerator attribute)

unit_cell_symmetry_params (sknano.generators.SWNTBundleGenerator attribute)

unit_vector (sknano.core.atoms.Bond attribute)

unit_vectors (sknano.core.atoms.Bonds attribute)

UnrolledSWNTGenerator (class in sknano.generators)

UnrolledSWNTMixin (class in sknano.structures)

unset_pbc() (sknano.core.atoms.BasisAtoms method)

update_attrs() (sknano.core.atoms.KDTreeAtomsMixin method)

update_bonds() (sknano.core.atoms.KDTreeAtomsMixin method)

update_Ch_list() (sknano.generators.MWNTBundleGenerator method)

update_neighbors() (sknano.core.atoms.KDTreeAtomsMixin method)

UserList (class in sknano.core)

V

v (sknano.core.atoms.MDAtom attribute)

V1 (sknano.core.atoms.POAV attribute)

v1 (sknano.core.atoms.POAV attribute)

V1 (sknano.core.atoms.POAV1 attribute)

v1 (sknano.core.atoms.POAV1 attribute)

V1 (sknano.core.atoms.POAV2 attribute)

v1 (sknano.core.atoms.POAV2 attribute)

V1 (sknano.core.atoms.POAVR attribute)

v1 (sknano.core.atoms.POAVR attribute)

V2 (sknano.core.atoms.POAV attribute)

v2 (sknano.core.atoms.POAV attribute)

V2 (sknano.core.atoms.POAV1 attribute)

v2 (sknano.core.atoms.POAV1 attribute)

V2 (sknano.core.atoms.POAV2 attribute)

v2 (sknano.core.atoms.POAV2 attribute)

V2 (sknano.core.atoms.POAVR attribute)

v2 (sknano.core.atoms.POAVR attribute)

V3 (sknano.core.atoms.POAV attribute)

v3 (sknano.core.atoms.POAV attribute)

V3 (sknano.core.atoms.POAV1 attribute)

v3 (sknano.core.atoms.POAV1 attribute)

V3 (sknano.core.atoms.POAV2 attribute)

v3 (sknano.core.atoms.POAV2 attribute)

V3 (sknano.core.atoms.POAVR attribute)

v3 (sknano.core.atoms.POAVR attribute)

values() (sknano.core.frozendict method)

VanDerWaalsAtom (class in sknano.core.atoms)

VanDerWaalsAtoms (class in sknano.core.atoms)

var() (sknano.core.math.Point method)

vdw_distance (sknano.generators.BilayerGrapheneGenerator attribute)

vdw_radius (sknano.generators.BilayerGrapheneGenerator attribute)

Vector (class in sknano.core.math)

vector (sknano.core.atoms.Bond attribute)

Vectors (class in sknano.core.math)

vectors (sknano.core.atoms.Bonds attribute)

velocities (sknano.core.atoms.MDAtoms attribute)

VelocityAtom (class in sknano.core.atoms)

VelocityAtoms (class in sknano.core.atoms)

view() (sknano.core.math.Point method)

viz() (sknano.io.DATAData method)

volume (sknano.core.atoms.MDAtoms attribute)

Vpi (sknano.core.atoms.POAV attribute)

vpi (sknano.core.atoms.POAV attribute)

Vpi (sknano.core.atoms.POAV1 attribute)

vpi (sknano.core.atoms.POAV1 attribute)

Vpi (sknano.core.atoms.POAV2 attribute)

vpi (sknano.core.atoms.POAV2 attribute)

Vpi (sknano.core.atoms.POAVR attribute)

vpi (sknano.core.atoms.POAVR attribute)

Vv1v2v3 (sknano.core.atoms.POAV attribute)

vx (sknano.core.atoms.MDAtom attribute)

vy (sknano.core.atoms.MDAtom attribute)

vz (sknano.core.atoms.MDAtom attribute)

W

w (sknano.core.geometric_regions.Parallelepiped attribute)

wall_diameters (sknano.generators.MWNTBundleGenerator attribute)

wall_radii (sknano.generators.MWNTBundleGenerator attribute)

wall_spacing (sknano.generators.MWNTBundleGenerator attribute)

walls (sknano.generators.MWNTBundleGenerator attribute)

with_doc (class in sknano.core)

wrap_cartesian_coordinate() (sknano.core.crystallography.Crystal2DLattice method)

wrap_coords() (sknano.core.atoms.BasisAtoms method)

wrap_fractional_coordinate() (sknano.core.crystallography.Crystal2DLattice method)

write() (sknano.io.DATAData method)

write_data() (sknano.core.crystallography.AlphaQuartz method)

write_dump() (sknano.core.crystallography.AlphaQuartz method)

write_xyz() (sknano.core.crystallography.AlphaQuartz method)

X

x (sknano.core.atoms.BasisAtom attribute)

xmax (sknano.core.geometric_regions.Cuboid attribute)

xmin (sknano.core.geometric_regions.Cuboid attribute)

xperiodic (sknano.core.atoms.BasisAtom attribute)

xs (sknano.core.atoms.BasisAtom attribute)

XYZ2DATAConverter (class in sknano.io)

XYZAtom (class in sknano.core.atoms)

XYZAtoms (class in sknano.core.atoms)

XYZData (class in sknano.io)

xyzfile (sknano.io.DATA2XYZConverter attribute)

XYZFormatSpec (class in sknano.io)

XYZIOError

XYZReader (class in sknano.io)

XYZWriter (class in sknano.io)

Y

y (sknano.core.atoms.BasisAtom attribute)

ymax (sknano.core.geometric_regions.Cuboid attribute)

ymin (sknano.core.geometric_regions.Cuboid attribute)

yperiodic (sknano.core.atoms.BasisAtom attribute)

ys (sknano.core.atoms.BasisAtom attribute)

Z

Z (sknano.core.atoms.Atom attribute)

z (sknano.core.atoms.BasisAtom attribute)

Z (sknano.core.atoms.ChargedAtom attribute)

z (sknano.core.atoms.MDAtom attribute)

Z (sknano.core.atoms.PBCAtom attribute)

z (sknano.core.atoms.StructureAtom attribute)

Z (sknano.core.atoms.TypeAtom attribute)

z (sknano.core.atoms.XYZAtom attribute)

ZincblendeStructure (class in sknano.core.crystallography)

ZincblendeStructureGenerator (class in sknano.generators)

zmax (sknano.core.geometric_regions.Cuboid attribute)

zmin (sknano.core.geometric_regions.Cuboid attribute)

zperiodic (sknano.core.atoms.BasisAtom attribute)

zs (sknano.core.atoms.BasisAtom attribute)